| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna14286.1-v1.0-hybrid |
| Family | GH2 |
| Protein Properties | Length: 1893 Molecular Weight: 209076 Isoelectric Point: 6.4254 |
| Chromosome | Chromosome/Scaffold: 7 Start: 7048486 End: 7072325 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 188 | 1062 | 0 |
| FVESLSGYWKFYLASTPGNVPLNFYHTTFQDSEWETLPVPSNWQMHGFDRPIYTNVVYPFPLDPPFVPVDNPTGCYRTDFVIPEEWKGRRVLLHFEAVDS AFCAWINGVPVSQDSRLPAEFEITDYCYPCGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLSKPQVEVKIDNSRETSKNTVIDNFTIEAALF DSGSWYSIGGSADLLSSNVANLKLDLSPGSILGFRDYSLVGRLEAPRLWSAEQPNLYTLVVILKDKSGNIVDCESCVVGIRQVSNAPKQLLVNGHPIIIR GVNRHEHHPRLGKTNIESCMIKDLVLMKQYNINAVRNSHYPQHPRWYELCDIFGMYMIDEANIEAHGFDYSGHVKHPTLEPSWATAMLDRVIGMVERDKN HACIISWSLGNESGYGPNHSASAGWVRGKDPSRLLHYEGGGSRTPSTDIICPMYMRVWDIVKIAKDPNETRPLILCEYSHAMGNSNGNIHEYWEAIDSTF GLQGGFIWDWVDQGLLKDSADGTKHWAYGGDFGDVPNDLNFCLNGLVWPDRTPHPAMHEVKYVYQPIKVSFSEGTLKELNFPLQVTNTHFYETTRALEFY WAAHGDGCELGSGNLSLPLIEPQKTYHIESQSAPWHTLWASSSAEEFFLTITAKLLHSTCWVEAGHVISSTQVQLPVKREFVPHVIKTKDATFLREIVGD TLKVSQQNAWEIILNVKMGTVESWKVEGVPLMTKGIFPCFWRAPTDNDKGGGASSYSSKWQAAHIDNLHYITKSCSVENMSDDLLKVAVVFLGVPNSGEG SGVEDRSALIEIDVIYTIYSSGDVVVECNVRPNSNLPPLPRVGVEFHLEKSIDQIKWYGRGPFECYPDRKVAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 1893 Download |
| MPRRVGWSVA GGVCSNPATS GAGPAPTVAR QRLGPGGLGP SFTPIGLGLL GPGRRRTCPF 60 LLVSSVVGYF SGLLPRKIDH SASSYGLQHR DCLVSTSNQA MAAASMMGQL VSPLETGHHV 120 WEDQSFIEWN KRDAHVPLRC HESIEGSLKY WYDRNKVNFM VSDSAPWNDD AVSEALNCAT 180 RWTKGLPFVE SLSGYWKFYL ASTPGNVPLN FYHTTFQDSE WETLPVPSNW QMHGFDRPIY 240 TNVVYPFPLD PPFVPVDNPT GCYRTDFVIP EEWKGRRVLL HFEAVDSAFC AWINGVPVSQ 300 DSRLPAEFEI TDYCYPCGSD KKNVLAVQVF RWSDGSYLED QDHWWLSGIH RDVLLLSKPQ 360 VEVKIDNSRE TSKNTVIDNF TIEAALFDSG SWYSIGGSAD LLSSNVANLK LDLSPGSILG 420 FRDYSLVGRL EAPRLWSAEQ PNLYTLVVIL KDKSGNIVDC ESCVVGIRQV SNAPKQLLVN 480 GHPIIIRGVN RHEHHPRLGK TNIESCMIKD LVLMKQYNIN AVRNSHYPQH PRWYELCDIF 540 GMYMIDEANI EAHGFDYSGH VKHPTLEPSW ATAMLDRVIG MVERDKNHAC IISWSLGNES 600 GYGPNHSASA GWVRGKDPSR LLHYEGGGSR TPSTDIICPM YMRVWDIVKI AKDPNETRPL 660 ILCEYSHAMG NSNGNIHEYW EAIDSTFGLQ GGFIWDWVDQ GLLKDSADGT KHWAYGGDFG 720 DVPNDLNFCL NGLVWPDRTP HPAMHEVKYV YQPIKVSFSE GTLKELNFPL QVTNTHFYET 780 TRALEFYWAA HGDGCELGSG NLSLPLIEPQ KTYHIESQSA PWHTLWASSS AEEFFLTITA 840 KLLHSTCWVE AGHVISSTQV QLPVKREFVP HVIKTKDATF LREIVGDTLK VSQQNAWEII 900 LNVKMGTVES WKVEGVPLMT KGIFPCFWRA PTDNDKGGGA SSYSSKWQAA HIDNLHYITK 960 SCSVENMSDD LLKVAVVFLG VPNSGEGSGV EDRSALIEID VIYTIYSSGD VVVECNVRPN 1020 SNLPPLPRVG VEFHLEKSID QIKWYGRGPF ECYPDRKVAA HVGVYEQKVG DLHVPYIVPG 1080 ECSGRADVRW VTFQNKDGLG IYASIYGSSP PMQMNASYYT TAELDRATHN EDLIRGDDIE 1140 VHLDHKHMGL AGDDSWSPCV HDKSASCQQG NKSRADMKLP LLLLLSAFLA IFASLNPTRQ 1200 WFGWTSPAAD LVVKNAKIYT VDDSLPLADS MAVRSGRVLR IGTYSSIQDM VGYGTKELDL 1260 RGKIVVPGFI DSHVHLIFAG LQMMRVELRG INSKDEFVKR VKEAVKNAKQ GSWILGGGWN 1320 NDLWGGELPL ASWIDDITPY NPVFLSRMDG HMSLANSVAL KLGGITKLSE DPNGGTIMKT 1380 TSGEPTGLLI DSAKELILPL IPEVSVEERR EALRRASDHA LMRGVTTVVD VGRYFPGASV 1440 KDSWEDFSGL RLRDLINNVG QSLSQWIYLG GVKAFADGSV GSRSALFHEP YVDDPHNYGI 1500 QVGDYESLHN LTLASDRAGL QVAIHAIGDR ANDLILNMYE SVISTNGVRD RRFRDVRTDL 1560 KVRTSLRSPP YGSDDGVPPP QQPPAASLIT SPPRRVRRIP IFRRDHPKLQ TKSTSPENWN 1620 SADSPGRESD QGCCSGGGAA SSEPDSQVRT FAPLYGADFP PYGAGEGAPD LAGKLEFGGL 1680 AGDVKWSGKL LGWRRALAGA VRWRTDGNPH RKTVRTSVAE TDCIYSPSWL RTSAPKIEHA 1740 QHLTHGAPAR FGKLGIVASV QSMNKKLGIN RAQKGSYLFQ SLLRSNVELV FGSDWPVVDI 1800 NPLGGIITAM KRIPPGWDIA WAPAESVSLN DSLKAYTLSA ARACFLDGEL GSLSPGKLAD 1860 FVVLSIYSWD DFVAEGSASI NATYVGGIES YP* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd01300 | YtcJ_like | 1.0e-90 | 1231 | 1547 | 335 | + YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. | ||
| pfam02836 | Glyco_hydro_2_C | 2.0e-109 | 474 | 755 | 292 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 2.0e-141 | 189 | 1060 | 894 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 121 | 1161 | 1095 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 192 | 1163 | 994 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| GO:0016787 | hydrolase activity |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1f4h_D | 0 | 189 | 1160 | 49 | 1001 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
| PDB | 1f4h_C | 0 | 189 | 1160 | 49 | 1001 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
| PDB | 1f4h_B | 0 | 189 | 1160 | 49 | 1001 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
| PDB | 1f4h_A | 0 | 189 | 1160 | 49 | 1001 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
| PDB | 1f4a_D | 0 | 189 | 1160 | 49 | 1001 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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