Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna14305.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 538 Molecular Weight: 58117.5 Isoelectric Point: 9.3244 |
Chromosome | Chromosome/Scaffold: 7 Start: 7244533 End: 7247838 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 189 | 523 | 0 |
KDACASTMPSKVIVPKGIYKLKEANFNGPCKAPIELQVCGTLQASPDGAQLSKPDTWIMFSYLDRFTLSGTGIFDGQGQQAWKANDCHKNPKCSSIAINM RFHSVKNSLVRDVSSLNSKNFHVNVLGCERLTFQHFTVTAPETSVNTDGIHIGRSTGINITDSNISTGDDCISIGDGTKQLTITKVTCGPGHGISIGSLG RYPKEEPVTGIYIKSCTLSNTMNGIRIKTWPNSPAASIASDIHFEDIIMNNVGNPILIDQEYCPWNLCNKQVASKVKISNVSFRNIRGTSSTPLALKILC AKGLPCDKVEMTDINLKYNGKQGSLTSQCSNVRPT |
Full Sequence |
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Protein Sequence Length: 538 Download |
MPSYSSKATG ARPKHQTPPR STLFRSRIES KEEEEVFSPL LNPKLAIHHL SPEKKLRIIL 60 KQLGGFLSRC VERFSPTFEK EEQKQVGGTG HSLLVHGGNP VLTPHSQAIA FANKDVAWLV 120 CWWRSTAAQG GVVTVVGEEM LSVGGALSRF GIASRSRELL GGGVFDVTSG KYGAKPNSDI 180 TQAIANAWKD ACASTMPSKV IVPKGIYKLK EANFNGPCKA PIELQVCGTL QASPDGAQLS 240 KPDTWIMFSY LDRFTLSGTG IFDGQGQQAW KANDCHKNPK CSSIAINMRF HSVKNSLVRD 300 VSSLNSKNFH VNVLGCERLT FQHFTVTAPE TSVNTDGIHI GRSTGINITD SNISTGDDCI 360 SIGDGTKQLT ITKVTCGPGH GISIGSLGRY PKEEPVTGIY IKSCTLSNTM NGIRIKTWPN 420 SPAASIASDI HFEDIIMNNV GNPILIDQEY CPWNLCNKQV ASKVKISNVS FRNIRGTSST 480 PLALKILCAK GLPCDKVEMT DINLKYNGKQ GSLTSQCSNV RPTITRVPNP LACATKS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-79 | 167 | 518 | 369 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-88 | 164 | 536 | 375 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-89 | 170 | 509 | 350 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-122 | 192 | 533 | 342 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-131 | 153 | 534 | 384 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-18 | 256 | 450 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 5e-16 | 255 | 520 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-16 | 255 | 520 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-16 | 255 | 520 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-16 | 255 | 520 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Sequence Alignments (This image is cropped. Click for full image.) |
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