Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna14452.1-v1.0-hybrid |
Family | AA7 |
Protein Properties | Length: 498 Molecular Weight: 56249.1 Isoelectric Point: 8.4326 |
Chromosome | Chromosome/Scaffold: 6 Start: 11468617 End: 11470685 |
Description | cytokinin oxidase/dehydrogenase 6 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 26 | 225 | 3.9e-21 |
GNRYQFLPMAVLHPKSVSDIATLIKHIWDIGPRSELTVAARGHGHSLHGQSQAHRGVVVNMESLKRPDIHVYTGNFPYADVSGGELWINILHESLRYGLA PKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVRQLEVVTDPKLSAGKGEIVTCSEKQNDDLFHGVLGGLGQFGIITRARILLEAAPARVKWIRVLYS |
Full Sequence |
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Protein Sequence Length: 498 Download |
MPSLNTLPVD GHFNFHEVQH AARDFGNRYQ FLPMAVLHPK SVSDIATLIK HIWDIGPRSE 60 LTVAARGHGH SLHGQSQAHR GVVVNMESLK RPDIHVYTGN FPYADVSGGE LWINILHESL 120 RYGLAPKSWT DYLHLTVGGT LSNAGISGQA FRHGPQISNV RQLEVVTDPK LSAGKGEIVT 180 CSEKQNDDLF HGVLGGLGQF GIITRARILL EAAPARVKWI RVLYSDFTAF TRDQEYLISG 240 ENTFNYVEGF VIINRTRLLN NWRSSFSPKD PVQASQFKSD GRTLYCLELA KYFNLDKTDI 300 INQEVDKLLS KLSYIPSTLF VSEVTYTDFL DRVHVSEMKL RSKDLWDIPH PWLNLLIPKS 360 KIHTFAQGVF GNILAETSNG PILIYPVNRS KWDNRTSVVI PEEHTFYLVA FLTSAVPSST 420 GTDGLEHILI RNKRILEFCE TANLGVKQYL PHYTKQEEWQ AHFGPHWEKF VQRKSTYDPL 480 AILAPGQRIF QKAISFS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01679 | bact_FAD_ox | 0.0003 | 14 | 208 | 195 | + FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. | ||
COG0277 | GlcD | 5.0e-21 | 26 | 487 | 486 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 3.0e-21 | 33 | 182 | 151 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam09265 | Cytokin-bind | 3.0e-153 | 214 | 490 | 281 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
PLN02441 | PLN02441 | 0 | 2 | 497 | 505 | + cytokinin dehydrogenase |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0009690 | cytokinin metabolic process |
GO:0016491 | oxidoreductase activity |
GO:0019139 | cytokinin dehydrogenase activity |
GO:0050660 | flavin adenine dinucleotide binding |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2q4w_A | 0 | 21 | 494 | 50 | 524 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2exr_A | 0 | 21 | 494 | 50 | 524 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
PDB | 3s1d_A | 0 | 3 | 491 | 19 | 516 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
PDB | 3s1c_A | 0 | 3 | 491 | 19 | 516 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
PDB | 3dq0_A | 0 | 3 | 491 | 19 | 516 | A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine |
Sequence Alignments (This image is cropped. Click for full image.) |
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