Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna14927.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 353 Molecular Weight: 37366.4 Isoelectric Point: 5.5369 |
Chromosome | Chromosome/Scaffold: 1 Start: 8330393 End: 8333131 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 338 | 0 |
DGACQNIGGGMVLFPQGIFMVAPVVLLGPCKGSMELRIQGTLLASRKLSDFLGIDHWITIQYVNGLLISGGGTLDGVGADGWPYNDCLQHPGSCKRLPAD VLVSNVNILAPGNSPNTDGIHIGSSQNIYIVHTNISTGDDCVSISSGSQYINVTGVQCGPGHGISIGSLGKDAGDTVNDLYVTHCRFVGTQNGVRIKTWA DAKPGTVSRVSFEHLEIVNVGNPIIIDQEYCPGGGCSTQVSSKVQIGDVKFNDIRGSSATNEAVVLKCSQSVPCQDIELTDIDLI |
Full Sequence |
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Protein Sequence Length: 353 Download |
MSLSFFIQFA CLVSSLLVSV TLVHAQTRVF DVTNYGGRGD GITDNSKAFI DAWDGACQNI 60 GGGMVLFPQG IFMVAPVVLL GPCKGSMELR IQGTLLASRK LSDFLGIDHW ITIQYVNGLL 120 ISGGGTLDGV GADGWPYNDC LQHPGSCKRL PADVLVSNVN ILAPGNSPNT DGIHIGSSQN 180 IYIVHTNIST GDDCVSISSG SQYINVTGVQ CGPGHGISIG SLGKDAGDTV NDLYVTHCRF 240 VGTQNGVRIK TWADAKPGTV SRVSFEHLEI VNVGNPIIID QEYCPGGGCS TQVSSKVQIG 300 DVKFNDIRGS SATNEAVVLK CSQSVPCQDI ELTDIDLIKE RRTWRTGGFI VL* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-70 | 28 | 340 | 338 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-71 | 28 | 338 | 347 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-74 | 32 | 337 | 341 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-76 | 57 | 337 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-94 | 25 | 337 | 347 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 4e-18 | 169 | 345 | 153 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-18 | 169 | 345 | 153 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-18 | 169 | 345 | 153 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-18 | 169 | 345 | 153 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 4e-18 | 169 | 345 | 153 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |