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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna14928.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 423 Molecular Weight: 45181 Isoelectric Point: 6.3024 |
Chromosome | Chromosome/Scaffold: 1 Start: 8335041 End: 8336850 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 385 | 0 |
NGACQNIGGGTVLFPKGTFMVAPVVLLGPCKGSMELRFQGNLLASKKPSDFLGIDHWITVQRVNGLMISGGGTLDGLGADGWGFNDCLKNPGRCKQLPAT LRLDFVTQGHIDTITSLNSKNTHINLFACKDVLISNVKIIAPGDSPNTDGIHIGNSQNIYIVDTHISTGDDCVSVLPGSQYINVTGVYCGPGHGISIGSL GRTAGESVSDLYVKNCRFVDTQNGVRIKTWAVDAKPGTVSRVGFEHIEMDNVDNPIVIDQEYCPGGGCSKQESSKVQIRDVKFNDIRGSSATKEAVTLKC SQSVPCQDIELKDIDLKNGGPGGPAVSLSYNVR |
Full Sequence |
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Protein Sequence Length: 423 Download |
MGLSFFIQSA CLVSFLVSVT LVHAQKRVFD VANYGARGDG RTDSSKAFID AWNGACQNIG 60 GGTVLFPKGT FMVAPVVLLG PCKGSMELRF QGNLLASKKP SDFLGIDHWI TVQRVNGLMI 120 SGGGTLDGLG ADGWGFNDCL KNPGRCKQLP ATLRLDFVTQ GHIDTITSLN SKNTHINLFA 180 CKDVLISNVK IIAPGDSPNT DGIHIGNSQN IYIVDTHIST GDDCVSVLPG SQYINVTGVY 240 CGPGHGISIG SLGRTAGESV SDLYVKNCRF VDTQNGVRIK TWAVDAKPGT VSRVGFEHIE 300 MDNVDNPIVI DQEYCPGGGC SKQESSKVQI RDVKFNDIRG SSATKEAVTL KCSQSVPCQD 360 IELKDIDLKN GGPGGPAVSL SYNVRGRTYG IQNPPSSVKP PVASSTELED YSSTELEDYN 420 WY* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 8.0e-82 | 7 | 391 | 386 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-82 | 26 | 368 | 348 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-87 | 31 | 387 | 361 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-95 | 56 | 384 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-111 | 29 | 393 | 366 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 6e-18 | 165 | 371 | 138 | 347 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 6e-18 | 165 | 371 | 138 | 347 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 2e-17 | 166 | 371 | 113 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-17 | 166 | 371 | 113 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-17 | 166 | 371 | 113 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |