Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna14987.1-v1.0-hybrid |
Family | AA2 |
Protein Properties | Length: 716 Molecular Weight: 80165.1 Isoelectric Point: 5.595 |
Chromosome | Chromosome/Scaffold: 2 Start: 21531636 End: 21535874 |
Description | debranching enzyme 1 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA2 | 449 | 695 | 0 |
GKLLRLLFHDCFVEGCDASVLLQGNGTERSDPANQSLAGFSVIDTAKRLLEILCPRTVSCADIVALAARDAVEITGGPLVHIPTGRRDGKVSSASNVRPN IVDTSFTMNEMIKLFSSKGLSLHDLVTLSGAHTIGAAHCSAFSDRFQQDSKGKFRLIDTSLDNGYAEKLMKQCPAGANPSTTVKNDPGTSFVFDNQYYRN LLAHRGLFQSDSVLFTDSRSSQQVENFAEDQVNFFESWVQSFLKLTS |
Full Sequence |
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Protein Sequence Length: 716 Download |
MKFAVEGCMH GDLDNVYRTL QHIEKVQNIK IDLLLCCGDF QAVRNEKDLE SLSVPPKYRA 60 MNSFWKYYSG EEIAPYPTIF IGGNHEASNY LWELYYGGWA APNIYFLGFA GVVKFGNIRI 120 GGLSGIYKSR DYRSGHYERP PYNENTIKSV YHVREYDVHK LMQVEEPIHI FLSHDWPLGI 180 TDCGDWKQLV RYKPHFETEV RERTLGSKAA AQLLEKLKPP YWFSAHLHCK FAARVQHGQD 240 GPVTNFLALD KCLPGKKFLQ VLDVDSEPGP YEIQYDEEWL EITRRFNPVF PLTIRSANFG 300 GVHIDKQDYR QWVRSKLQAR GARPFEFSQT APSYNPSNSV SYASLPGYTR NPQTESLLQF 360 LELPYLLDDT SESSEVFKGP FPSSDRDDSE EIPIDDVDEL EELAEEAGDA SCASAHLTLN 420 FYSTSCPSAE LMVRGTVRSA SNIDPTVPGK LLRLLFHDCF VEGCDASVLL QGNGTERSDP 480 ANQSLAGFSV IDTAKRLLEI LCPRTVSCAD IVALAARDAV EITGGPLVHI PTGRRDGKVS 540 SASNVRPNIV DTSFTMNEMI KLFSSKGLSL HDLVTLSGAH TIGAAHCSAF SDRFQQDSKG 600 KFRLIDTSLD NGYAEKLMKQ CPAGANPSTT VKNDPGTSFV FDNQYYRNLL AHRGLFQSDS 660 VLFTDSRSSQ QVENFAEDQV NFFESWVQSF LKLTSTHVKT GDEGEIRTFC ATANT* 720 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam00141 | peroxidase | 4.0e-5 | 647 | 678 | 32 | + Peroxidase. |
pfam00141 | peroxidase | 3.0e-57 | 433 | 582 | 151 | + Peroxidase. |
PLN03030 | PLN03030 | 9.0e-75 | 421 | 714 | 301 | + cationic peroxidase; Provisional |
cd00693 | secretory_peroxidase | 8.0e-146 | 416 | 710 | 298 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. |
cd00844 | MPP_Dbr1_N | 2.0e-168 | 4 | 259 | 261 | + Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. |
Gene Ontology | |
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GO Term | Description |
GO:0004601 | peroxidase activity |
GO:0006397 | mRNA processing |
GO:0006979 | response to oxidative stress |
GO:0016787 | hydrolase activity |
GO:0016788 | hydrolase activity, acting on ester bonds |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3hdl_A | 0 | 417 | 715 | 2 | 304 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
PDB | 1sch_B | 0 | 416 | 714 | 1 | 294 | A Chain A, Peanut Peroxidase |
PDB | 1sch_A | 0 | 416 | 714 | 1 | 294 | A Chain A, Peanut Peroxidase |
PDB | 1bgp_A | 0 | 417 | 714 | 9 | 305 | A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 |
PDB | 1qo4_A | 0 | 416 | 714 | 2 | 304 | A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 |
Sequence Alignments (This image is cropped. Click for full image.) |
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