Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna16186.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 482 Molecular Weight: 52778.2 Isoelectric Point: 7.9202 |
Chromosome | Chromosome/Scaffold: 1 Start: 17373253 End: 17376854 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 108 | 452 | 0 |
QEQQGGAQLNVPEGRWLTGSFNLTSNFTLFLEHGAVILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGDGLTDVVITGHNGTIDGQGKMWWELWWN RTLEYTRGHLLELMNSNNILISNLTFLNSPFWTVHPVYCSNVVIKDMTILAPLKAPNTDGIDADSCTNVCIEDCYIESGDDLIAIKSGWDHYGIKMARPS SNIIVRRVSGTTPTCSGIGIGSEMSGGISNVTIEDLHVWNSAAGVRIKSDKGRGGYIENVTISNIKMERVKTPIKFSRGSNDHPDKGWDPKAVPKVKGIF ISNVLSLNSTKAPVLLGVEGGSYEGICLRNVTVLGLAASAAWQCE |
Full Sequence |
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Protein Sequence Length: 482 Download |
MDSEKSIFGG AIRPTWPSLL LLFTIMLLLS YQISTMAALP RWAGSVWGSE TALTDPTRRS 60 CSGFFGEDGR APRRRRRKTV MSIRDFGGVG DGTTSNTAAF RKAIRFMQEQ QGGAQLNVPE 120 GRWLTGSFNL TSNFTLFLEH GAVILGSQDP KEWPIIEPLP SYGRGRERLG GRHISLIHGD 180 GLTDVVITGH NGTIDGQGKM WWELWWNRTL EYTRGHLLEL MNSNNILISN LTFLNSPFWT 240 VHPVYCSNVV IKDMTILAPL KAPNTDGIDA DSCTNVCIED CYIESGDDLI AIKSGWDHYG 300 IKMARPSSNI IVRRVSGTTP TCSGIGIGSE MSGGISNVTI EDLHVWNSAA GVRIKSDKGR 360 GGYIENVTIS NIKMERVKTP IKFSRGSNDH PDKGWDPKAV PKVKGIFISN VLSLNSTKAP 420 VLLGVEGGSY EGICLRNVTV LGLAASAAWQ CEFVSGFAND VFPTPCPQMQ DIGSFDWCQQ 480 R* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 9.0e-16 | 78 | 466 | 408 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-20 | 79 | 446 | 388 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-20 | 81 | 407 | 337 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-23 | 177 | 454 | 282 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-47 | 78 | 420 | 382 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.99965e-42 | 81 | 450 | 28 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.99965e-42 | 81 | 450 | 28 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.99965e-42 | 81 | 450 | 28 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.99965e-42 | 81 | 450 | 28 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-21 | 123 | 455 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |