Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna17261.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 432 Molecular Weight: 46662.5 Isoelectric Point: 7.9007 |
Chromosome | Chromosome/Scaffold: 4 Start: 6319029 End: 6323419 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 401 | 0 |
LCSTSQLLKIPAGKTFVVKPFELLGPCKFSSVILQIDGNIVAPSTRKGWGDVCKLGCWLCFRNVKGLIIKGGGLINGKGAIWWSQKTQFINALHFIKCDQ LQLSGFTSRDSPKIHIFIYNCHGVRISNIHVNAPENSPNTDGIDISLSSQVTIQDSVIRTGDDCVAIKGGSSFVNVTHVTCGPGHGFSLGSLGQDPTTED KVEHIYFQNCNCERTMNCARIKTYMGGVGYAREIFFKGMTLVQSRNPILIDQHYVAVAANFPAKNGGVKVSEVEFIGFTGTSSSEEAITLDCSDLGCSNI LMDHVILTSATGKPLRSVCRKATG |
Full Sequence |
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Protein Sequence Length: 432 Download |
MGAIPDLMLN MNLNLEETTG ERRGFVHYYT VVFLWIIASF SFGNGYGQNG TLSVLDFGAH 60 GDGVADDTQA FINAWNKLCS TSQLLKIPAG KTFVVKPFEL LGPCKFSSVI LQIDGNIVAP 120 STRKGWGDVC KLGCWLCFRN VKGLIIKGGG LINGKGAIWW SQKTQFINAL HFIKCDQLQL 180 SGFTSRDSPK IHIFIYNCHG VRISNIHVNA PENSPNTDGI DISLSSQVTI QDSVIRTGDD 240 CVAIKGGSSF VNVTHVTCGP GHGFSLGSLG QDPTTEDKVE HIYFQNCNCE RTMNCARIKT 300 YMGGVGYARE IFFKGMTLVQ SRNPILIDQH YVAVAANFPA KNGGVKVSEV EFIGFTGTSS 360 SEEAITLDCS DLGCSNILMD HVILTSATGK PLRSVCRKAT GRATFTKPLV PCLSGKQSLS 420 PTIAPISVDM H* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 9.0e-59 | 79 | 400 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-65 | 51 | 382 | 346 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-82 | 52 | 418 | 380 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-91 | 34 | 414 | 390 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-107 | 30 | 419 | 395 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 0.000000000000004 | 216 | 375 | 165 | 322 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.000000000000009 | 144 | 385 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000009 | 144 | 385 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000009 | 144 | 385 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000009 | 144 | 385 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |