Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna17262.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 416 Molecular Weight: 43949 Isoelectric Point: 6.3265 |
Chromosome | Chromosome/Scaffold: 4 Start: 6323998 End: 6327979 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 387 | 0 |
CSTGQTLNIPAGKTFVVKPLKLEGPCKSSGVVIQIDGNLVGPPTLGEWQDACALKCWLCFMSVNGLVIKGKGVIDGKGSIWWNQKTQSIDALYFNKCYQL QLSGITSRDSPRVHIFLFRSNGAHISNVHVSAPENSPNTDGIDVSESSQVTIQDSVIGTGDDCVAIKGGASFVNVTHVTCGPGHGFSVGSLGMIPSTADE VHDIYFQNCNCDKTMNCARIKTWMGGSGFAKEIFYNQMTLQQSQNPILIDQHYCDGGHSCTVMAGAVKVSDITFSGFTGSSASEQAITLNCSDSGCPNIL LDHVSLTSGIGKPLRSACYKATGK |
Full Sequence |
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Protein Sequence Length: 416 Download |
MLILSLPGLP SLLHSLVFLW IVASSTFGVG YGQNGTLNLL DFGASGNGVA DDTEAFDTAW 60 KTLCSTGQTL NIPAGKTFVV KPLKLEGPCK SSGVVIQIDG NLVGPPTLGE WQDACALKCW 120 LCFMSVNGLV IKGKGVIDGK GSIWWNQKTQ SIDALYFNKC YQLQLSGITS RDSPRVHIFL 180 FRSNGAHISN VHVSAPENSP NTDGIDVSES SQVTIQDSVI GTGDDCVAIK GGASFVNVTH 240 VTCGPGHGFS VGSLGMIPST ADEVHDIYFQ NCNCDKTMNC ARIKTWMGGS GFAKEIFYNQ 300 MTLQQSQNPI LIDQHYCDGG HSCTVMAGAV KVSDITFSGF TGSSASEQAI TLNCSDSGCP 360 NILLDHVSLT SGIGKPLRSA CYKATGKASF TDPPVPCLNS KQNLAPVMAP LPITY* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-67 | 36 | 372 | 351 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-69 | 64 | 389 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 8.0e-88 | 37 | 398 | 371 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 8.0e-90 | 41 | 402 | 374 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 2.0e-97 | 27 | 404 | 382 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-20 | 50 | 371 | 20 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-20 | 136 | 372 | 79 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-20 | 136 | 372 | 79 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-20 | 136 | 372 | 79 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-20 | 136 | 372 | 79 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |