Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna17351.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 733 Molecular Weight: 80135.8 Isoelectric Point: 7.8344 |
Chromosome | Chromosome/Scaffold: 2 Start: 10220461 End: 10225522 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 402 | 0 |
WKEACQSKGRVHLIIPRGKYMVGPLKFSGPCRNVSALNLRMNGYLKATTELSKYEFGGGWIQFAWTKGLTLTGGGTFDGQGAKAWPHNKCSKDSNCKLLP TSLKFIGMNKTVIRGISSVNSMFFHIAVVDCHYFKGSKLKIQAPETSPNTDGIHIERSSSVYFSSSHIATGDDCISVGEGNSHVTITSIACGPGHGISVG SLGKYPNEGDVSGLVVRDCTISGTTNGIRIKTWANSPGRSAATNMTFTNIVMNNVTNPIIIDQLYCPLRSCASQTPSKVKLSDIYFKNIRGTSSSQVAVA LECSRGIPCQNIYLEDVHLNLASGKKESEKK |
Full Sequence |
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Protein Sequence Length: 733 Download |
MSLDYSFVRL LLLLSLFCFQ CVFGRERAAD SVGLQTINVD HKAKSSFVFN VKSFGAKADG 60 QTDDSKAFTA AWKEACQSKG RVHLIIPRGK YMVGPLKFSG PCRNVSALNL RMNGYLKATT 120 ELSKYEFGGG WIQFAWTKGL TLTGGGTFDG QGAKAWPHNK CSKDSNCKLL PTSLKFIGMN 180 KTVIRGISSV NSMFFHIAVV DCHYFKGSKL KIQAPETSPN TDGIHIERSS SVYFSSSHIA 240 TGDDCISVGE GNSHVTITSI ACGPGHGISV GSLGKYPNEG DVSGLVVRDC TISGTTNGIR 300 IKTWANSPGR SAATNMTFTN IVMNNVTNPI IIDQLYCPLR SCASQTPSKV KLSDIYFKNI 360 RGTSSSQVAV ALECSRGIPC QNIYLEDVHL NLASGKKESE KKKKLKSEME SASELVAFPL 420 LTTPIESNYR ACTIPYRFPS DNPRKPTPTE IAWIDLFLNS IPSFKKRAES DATVSDAPAK 480 AELFAHRYSE MLEDLKKDPE SHGGPPDCIL LCRLREIVLR ELGFRDIFKK VKDEENAKVI 540 TLFDNVVDLN DAIEDEGKRV ENLVRGIFAG NIFDLGSAQA VIFVDNSGAD IILGILPFAR 600 ELLRRGTQVV LAANDMPSIN DVTYHELIEI IAKLKDNHGK LKGVDTTNLF IANSGNDLPV 660 IDLASVSQEL AYLASDADLV ILEGMGRGIE TNLYAQFKCD SLKIGMVKHP EVAQFLGGRL 720 YDCVFKYNEV LS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-78 | 39 | 390 | 352 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-82 | 26 | 390 | 370 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-89 | 42 | 390 | 354 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-94 | 76 | 390 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 41 | 392 | 352 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2q40_A | 0 | 410 | 732 | 2 | 367 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
PDB | 1xfi_A | 0 | 410 | 732 | 2 | 367 | A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g17340 |
PDB | 1bhe_A | 4e-22 | 144 | 390 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-17 | 116 | 407 | 47 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-17 | 116 | 407 | 47 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |