| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna17437.1-v1.0-hybrid |
| Family | CBM43 |
| Protein Properties | Length: 563 Molecular Weight: 62200.6 Isoelectric Point: 9.3537 |
| Chromosome | Chromosome/Scaffold: 2 Start: 11074185 End: 11081292 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 483 | 561 | 1.8e-28 |
| WCLVKEGANKTAVAEALSYACSQGNKTCDPIQPGGKCFKPNTLAQHASYAFSAYWAQFRKAGGSCSFGGLAVQTIKDPS | |||
| GH17 | 135 | 456 | 0 |
| VGVNYGQLGNNLPSPSESVKLIQNLKAKRVKIYDANPKILEALRNTDLQVSMMVPNELINNISSNQTLANQWVHANVVPFYPHTLIRYLLVGNEILSAPD KSIWFNLVPAMRKIKKALKIHGITKVKVGTPSAMDVLESSFPPSNGTFRSDISSSVIKPMLKFLFKTKSFFFVDVYPFFPWASDPTHIDLDYALLEFTNI TYTDPVSGLTYHNLFDQMVDALIFAMKRRGYPDIRVWIAETGWPSGGDYDQIGTNIHNAATYNRNVIKKFTAKPPVGTPARPGVVLPSFIFALYNENMKP GPGTERNFGLLYPNGSNVYEID | |||
| Full Sequence |
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| Protein Sequence Length: 563 Download |
| MSNPKPRGEA WKNPEDVSLC MAVVAVGEDG DKATGQEKKK LWDRIWEVYE ACKPPSFVIR 60 SGGGCEARWR KIRPGCTKWR KALTKAEAAH ANGENVTDLP QSPFDQIRTM ELGLVPLLLL 120 CFFISISSAE FSAKVGVNYG QLGNNLPSPS ESVKLIQNLK AKRVKIYDAN PKILEALRNT 180 DLQVSMMVPN ELINNISSNQ TLANQWVHAN VVPFYPHTLI RYLLVGNEIL SAPDKSIWFN 240 LVPAMRKIKK ALKIHGITKV KVGTPSAMDV LESSFPPSNG TFRSDISSSV IKPMLKFLFK 300 TKSFFFVDVY PFFPWASDPT HIDLDYALLE FTNITYTDPV SGLTYHNLFD QMVDALIFAM 360 KRRGYPDIRV WIAETGWPSG GDYDQIGTNI HNAATYNRNV IKKFTAKPPV GTPARPGVVL 420 PSFIFALYNE NMKPGPGTER NFGLLYPNGS NVYEIDLTGK TPVLEFKPLP PATNNKPYPG 480 PIWCLVKEGA NKTAVAEALS YACSQGNKTC DPIQPGGKCF KPNTLAQHAS YAFSAYWAQF 540 RKAGGSCSFG GLAVQTIKDP SE* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-20 | 483 | 554 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-32 | 483 | 561 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-106 | 135 | 456 | 323 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 135 | 457 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 135 | 457 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 135 | 457 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 134 | 458 | 1 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 134 | 458 | 1 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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