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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna17555.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 448 Molecular Weight: 49811.1 Isoelectric Point: 8.2317 |
Chromosome | Chromosome/Scaffold: 2 Start: 12033155 End: 12036938 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 162 | 367 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIAYGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWVD HNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 448 Download |
MRLASSRATM RFYMTPLLLL LALLVCVAAS VENDKPVHSR FVEVEEPKSS FNSSMADRSN 60 DDWNEHAVDN PEEIASLVDT SIRNSSARRE LGYFSCATGN PIDDCWRCDP QWQRHRKRLA 120 NCGIGFGRNA VGGRDGKYYV VSDPGHDDPV NPRPGTLRHA VIQDRPLWIV FKRDMVITLK 180 QELIMNSFKT IDARGVNVHI AYGGCITIQF VTNVIIHGLH IHDCKPTGNA MVRSSPSHYG 240 WRTMADGDGI SIFGSSHIWV DHNSLSNCAD GLIDAIMGST AITISNNYFT HHNEVMLLGH 300 SDSYTRDKQM QVTIAYNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI GGSADPTINS 360 QGNRYLAPNN RFAKEVTHRV QTTGRWRHWN WRSEGDLLLN GAYFVQSGAG AAASYARASS 420 LGAKSSSMIG TITAGAGVLN CRFGRQC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-26 | 187 | 363 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-70 | 180 | 365 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-80 | 174 | 369 | 207 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 100 | 439 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 100 | 439 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-18 | 169 | 367 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 203 | 342 | 147 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000007 | 190 | 438 | 151 | 406 | A Chain A, Bacillus Subtilis Pectate Lyase |