Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna17837.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 376 Molecular Weight: 40208.3 Isoelectric Point: 10.2049 |
Chromosome | Chromosome/Scaffold: 1 Start: 12616636 End: 12618632 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 364 | 0 |
WKEACKSRGRVHLIIPRGTYMVGPLKLSGPCRNVSALNLRVNGYLKATTELSKYEFGGGWIQFAWTKGLTLTGGGTFDGQGAKAWPHNNCSKDSKCKLLP TSLKFIGMNKTVIRGISSVNSKFFRIAVVDCRYFKGSKLKIQAPETSPNTDGIHIARSSNVHFSSSHIATGDDCISVGEGNSHVAITSIVCGPGHGIRIK TWANSPGRNATTNMTFTNIVMNNVTNPIIIDQLYCPFRSCTSKTPSKVKLSDIYFKNIRGTSSSQVAVALECSKGIPCQIIYLEDVHLNLASGKKEVTST CSNVKAK |
Full Sequence |
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Protein Sequence Length: 376 Download |
MAGGAGGLLV GSLSSMLLLE RGVNVDRKAK SSLVFNVKSF GAKADGQSDD TKAFTTAWKE 60 ACKSRGRVHL IIPRGTYMVG PLKLSGPCRN VSALNLRVNG YLKATTELSK YEFGGGWIQF 120 AWTKGLTLTG GGTFDGQGAK AWPHNNCSKD SKCKLLPTSL KFIGMNKTVI RGISSVNSKF 180 FRIAVVDCRY FKGSKLKIQA PETSPNTDGI HIARSSNVHF SSSHIATGDD CISVGEGNSH 240 VAITSIVCGP GHGIRIKTWA NSPGRNATTN MTFTNIVMNN VTNPIIIDQL YCPFRSCTSK 300 TPSKVKLSDI YFKNIRGTSS SQVAVALECS KGIPCQIIYL EDVHLNLASG KKEVTSTCSN 360 VKAKFIGTQI PPPCT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 6.0e-64 | 25 | 374 | 382 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-69 | 36 | 371 | 372 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-72 | 62 | 362 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-73 | 28 | 374 | 382 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 0 | 28 | 375 | 379 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.0000000000001 | 128 | 345 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000004 | 102 | 310 | 47 | 254 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000004 | 102 | 310 | 47 | 254 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000004 | 102 | 310 | 47 | 254 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000004 | 102 | 310 | 47 | 254 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |