| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna17951.1-v1.0-hybrid |
| Family | GH51 |
| Protein Properties | Length: 766 Molecular Weight: 83792.9 Isoelectric Point: 4.7776 |
| Chromosome | Chromosome/Scaffold: 6 Start: 16217405 End: 16226850 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 225 | 745 | 0 |
| FDQVSAMPLDTYKGHGFRKDLVDMLADMKPQFLRFPGGCFVEGEWLRNAFRWKETIGQWEERPGHFGDVWMYWTDDGLGYFEFLQLAEDLGTQPIWVFNN GISHNDQVDTSNILPFVQEALDGIEFATGSPDSTWGSIRAAMGHPEPFDLRYVAVGNEDCGKKNYRGGMWVVLQDLRTTEQGQMLPSRRRSEIEQNLWMN YIVSDIVLKNSALPEIVGNRNYLKFYSAIKRAYPDIQIISNCDGSSHPLDHPADLYDFHVMFFVPELVYTSASNMFSMAHQFDRTPRKGPKAFVSEYAVT GKDAGGGSLLAALAEAGFLIGLEKNSDVVEMASYAPLFVNANNKRESSGATIFNATLQTESSTSLLASAILWKSSEDQKTYLRIKDGFRFCMVSRGVDPM RKVCPAELEGQVITPVQLFADQMPIFIQLGFSLAGSGLRNSWTWIVNFGSNIVNLRIRVDGLEPNSVSMSGSTKTVLTSKNVMDENSFDEPKKVIPNLGL LENAGEEMDVGLSAHSFTSID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 766 Download |
| MGVLDVLLCC CCCLVLPCFA VEAQTAQLIV DASQASGRPI SPTLFGLFFE EINHAGAGGL 60 WAELVNNRGP SLSSGFEAGG PNTPSNIDPW SIIGSESSLL VSTDRSSCFE RNKVALRMEV 120 LCDSQGANIC PAGGVGIYNP GFWGMNVEKG KTYSVTLYVR SSGAINVSVS LTSSNGLQTL 180 AAENIMASVS EVSNWTKFNV LLVAKGTNPS SRLQLTTTRK GLIWFDQVSA MPLDTYKGHG 240 FRKDLVDMLA DMKPQFLRFP GGCFVEGEWL RNAFRWKETI GQWEERPGHF GDVWMYWTDD 300 GLGYFEFLQL AEDLGTQPIW VFNNGISHND QVDTSNILPF VQEALDGIEF ATGSPDSTWG 360 SIRAAMGHPE PFDLRYVAVG NEDCGKKNYR GGMWVVLQDL RTTEQGQMLP SRRRSEIEQN 420 LWMNYIVSDI VLKNSALPEI VGNRNYLKFY SAIKRAYPDI QIISNCDGSS HPLDHPADLY 480 DFHVMFFVPE LVYTSASNMF SMAHQFDRTP RKGPKAFVSE YAVTGKDAGG GSLLAALAEA 540 GFLIGLEKNS DVVEMASYAP LFVNANNKRE SSGATIFNAT LQTESSTSLL ASAILWKSSE 600 DQKTYLRIKD GFRFCMVSRG VDPMRKVCPA ELEGQVITPV QLFADQMPIF IQLGFSLAGS 660 GLRNSWTWIV NFGSNIVNLR IRVDGLEPNS VSMSGSTKTV LTSKNVMDEN SFDEPKKVIP 720 NLGLLENAGE EMDVGLSAHS FTSIDLLVEP SHLTTGADSS SISSS* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| smart00813 | Alpha-L-AF_C | 0.0002 | 547 | 609 | 87 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
| pfam06964 | Alpha-L-AF_C | 5.0e-8 | 669 | 740 | 74 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
| smart00813 | Alpha-L-AF_C | 3.0e-9 | 669 | 740 | 74 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
| COG3534 | AbfA | 8.0e-30 | 240 | 387 | 153 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 0.000000000000009 | 240 | 565 | 48 | 330 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 0.000000000000009 | 240 | 565 | 48 | 330 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 0.000000000000009 | 240 | 565 | 48 | 330 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 0.000000000000009 | 240 | 565 | 48 | 330 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 0.000000000000009 | 240 | 565 | 48 | 330 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
