| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna18037.1-v1.0-hybrid |
| Family | AA7 |
| Protein Properties | Length: 559 Molecular Weight: 61311.6 Isoelectric Point: 6.6494 |
| Chromosome | Chromosome/Scaffold: 6 Start: 17709032 End: 17715990 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA7 | 135 | 330 | 1e-25 |
| NIPDLVVFARSEEEVCKIVKLCDKHKVPIVPYGGATSIEGHTLSPHGGVCIDMSSMKNVKALHVEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGAT IGGMCATRCSGSLAVRYGTMRDNVISLKAVLANGEVVKTASRARKSAAGYDLTRLMIGSEGTLGVITEVTLRLQKIPKYSVVAMCNFPSIKDAADV | |||
| Full Sequence |
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| Protein Sequence Length: 559 Download |
| MAMSSWFSRL RHSSKSLLTI STPHFLRSSS TNLLKTSTTN SGSSKTPFPF WSLPIAVAVS 60 AAAGSLALYP QSNLPRCEPP NPNSRTEFVV KGSHKPVPQE LVNELKAFCK DNMTMDYEER 120 YNHGKPLNSF HKAVNIPDLV VFARSEEEVC KIVKLCDKHK VPIVPYGGAT SIEGHTLSPH 180 GGVCIDMSSM KNVKALHVED MDVVVEPGIG WMELNEYLEP YGLFFPLDPG PGATIGGMCA 240 TRCSGSLAVR YGTMRDNVIS LKAVLANGEV VKTASRARKS AAGYDLTRLM IGSEGTLGVI 300 TEVTLRLQKI PKYSVVAMCN FPSIKDAADV AITTMLSGIQ VSRVELLDEV QVRAINIANG 360 KNLPETPTLM FEFIGTEAYS REQTQIVQRI VSEHNGSDFV FAEDTDAKKE LWKIRKEALW 420 ACFAMEPDFE AMISDVCVPL SCLAELISRS KQELDASELV CTVIAHAGDG NFHTVILFDP 480 NKEEHRREAE RLNHFMVHTA LSMEGTCTGE HGVGTGKMKY LEEELGAEAL KTMKRIKVAL 540 DPNNIMNPGK LIPSHVCF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 2.0e-53 | 136 | 557 | 428 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 2.0e-68 | 310 | 551 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 5.0e-95 | 140 | 550 | 420 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 1.0e-122 | 104 | 554 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 47 | 558 | 518 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 7.00649e-43 | 139 | 552 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 7.00649e-43 | 139 | 552 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 7.00649e-43 | 139 | 552 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 7.00649e-43 | 139 | 552 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 7.00649e-43 | 139 | 552 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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