| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna18180.1-v1.0-hybrid |
| Family | PL1 |
| Protein Properties | Length: 377 Molecular Weight: 41730 Isoelectric Point: 8.1942 |
| Chromosome | Chromosome/Scaffold: 6 Start: 4623993 End: 4626942 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 105 | 284 | 0 |
| IVFDISGTINLSSYLNVSSHKTIDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLRDYEDGLIDITRCSTDITISR CHFSEHDKTMLIGADPSHVDDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 377 Download |
| MGNSHGHRKH RNGAKHPVTA TPPFKYQSSD HPEAHNPSSS KPIMAVSLPY SHVDSSLRAL 60 AAQAEGFGRL AIGGLHGPLY HVTTLADDGP GSLREACRKK EPLWIVFDIS GTINLSSYLN 120 VSSHKTIDGR GQRIKFTGKG LRLKECEHVI ICNLEFEGGR GPDVDGIQIK PNSKHIWIDR 180 CSLRDYEDGL IDITRCSTDI TISRCHFSEH DKTMLIGADP SHVDDRCIRV TIHHCFFDGT 240 RQRHPRVRFA KVHLYNNYTR NWGIYAVCAS VESQIYSQCN IYEAGQKKIA FKYLTEKAAD 300 KEAATTGFIK SEGDLFITGT KAGSSTEGGE DCTFHPSKHY QTWTVGPPVD DLKHVLQHCT 360 GWQSIPRPAD QASVAS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 6.0e-38 | 100 | 280 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 7.0e-49 | 73 | 355 | 302 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 3.0e-65 | 112 | 285 | 188 | + Amb_all domain. | ||
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 2e-40 | 51 | 341 | 12 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 2e-40 | 51 | 341 | 12 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-25 | 72 | 282 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 5e-25 | 121 | 282 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 1e-24 | 101 | 348 | 46 | 300 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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