Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna19241.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 487 Molecular Weight: 53032.5 Isoelectric Point: 7.8984 |
Chromosome | Chromosome/Scaffold: 7 Start: 2811284 End: 2814069 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 440 | 0 |
ATDGGAQLFVPAGKWLTGSFSLTSHFTLYLHKDAVLLASQDLNEWPVLKALPSYGRGRDAAAGRYSSLIFGTNLTDVIVTGENGTIDGQGEFWWQQFHKK KLKYTRPYLIEIMFSSDIQISNLTLLNSPSWNVHPVYSSNILVQGITIIAPISSPNTDGINPDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGISFGMPTK QLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIVAINTESAVRIKTAVGRGAYVKDIYVRRMTLHTMKWAFWMTGNYGSHADGNYDKNAFPEITGINY RDVVAENVTMAARLEGIADHPFTGICMSNVTIGLAKKAKKQPWTCTDIQG |
Full Sequence |
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Protein Sequence Length: 487 Download |
MINSLPTESV NKVMKSVFIV VVVALILRGG ESRGVTKAKP KAPKKFESFE YSAMNCRAHS 60 ASLTEFGGVG DGKTSNTKAF QTAISKLSQY ATDGGAQLFV PAGKWLTGSF SLTSHFTLYL 120 HKDAVLLASQ DLNEWPVLKA LPSYGRGRDA AAGRYSSLIF GTNLTDVIVT GENGTIDGQG 180 EFWWQQFHKK KLKYTRPYLI EIMFSSDIQI SNLTLLNSPS WNVHPVYSSN ILVQGITIIA 240 PISSPNTDGI NPDSCTNTKI EDCYIVSGDD CVAVKSGWDE YGISFGMPTK QLVIRRLTCI 300 SPYSATIALG SEMSGGIQDV RAEDIVAINT ESAVRIKTAV GRGAYVKDIY VRRMTLHTMK 360 WAFWMTGNYG SHADGNYDKN AFPEITGINY RDVVAENVTM AARLEGIADH PFTGICMSNV 420 TIGLAKKAKK QPWTCTDIQG ITSGVTPTPC GLLPDQGTDK PGGCDFPTDD LPIDMVEIKK 480 CTYRSNV |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03010 | PLN03010 | 3.0e-17 | 65 | 356 | 309 | + polygalacturonase |
PLN02218 | PLN02218 | 1.0e-24 | 60 | 450 | 406 | + polygalacturonase ADPG |
PLN03003 | PLN03003 | 6.0e-25 | 58 | 447 | 407 | + Probable polygalacturonase At3g15720 |
pfam00295 | Glyco_hydro_28 | 4.0e-27 | 159 | 438 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
COG5434 | PGU1 | 7.0e-55 | 61 | 356 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 59 | 426 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 59 | 426 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 59 | 426 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 59 | 426 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000002 | 93 | 396 | 37 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Sequence Alignments (This image is cropped. Click for full image.) |
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