Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna19480.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 386 Molecular Weight: 42330.5 Isoelectric Point: 9.8582 |
Chromosome | Chromosome/Scaffold: 3 Start: 647104 End: 648581 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 105 | 305 | 0 |
LWIVFAKDMVITLKNELIMNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKSGMVRSTLNHVGHRLGSDGDSISIFASSHVWVDHCFLS RGADGLVDITHASTAVTVTNNYFSQHDKVMLLGHNDKFTADKIMKVTIAFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFI A |
Full Sequence |
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Protein Sequence Length: 386 Download |
MANISLLLLL LCSLAYNAPT LEAAYSPSYS KNPKPTTKNV VDSCWRSNPN WARNRQALAN 60 CAVGFGKDAI GGKYGRIYVV TTSSDDPINP KPGTLRYGVI QTQPLWIVFA KDMVITLKNE 120 LIMNSFKTID GRGAKVEIAY GPCITVQGVS HVIIHGISIH DCKPGKSGMV RSTLNHVGHR 180 LGSDGDSISI FASSHVWVDH CFLSRGADGL VDITHASTAV TVTNNYFSQH DKVMLLGHND 240 KFTADKIMKV TIAFNRFGAG LIERMPRVRF GYAHVANNRY DEWKMYAIGG SANPTIFSEG 300 NYFIAPTNPD AKQVTKREAY GGWKNWKWRS SKDVLQNGAY FIQSGWGSCY PMYTRTQKFK 360 VSPGSMVPAL TSNAGPLRCI VGKAC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 186 | 345 | 172 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-56 | 118 | 303 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-69 | 112 | 306 | 206 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 39 | 375 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 39 | 375 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-20 | 107 | 305 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-16 | 131 | 303 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000000003 | 186 | 315 | 205 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |