Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna19639.1-v1.0-hybrid |
Family | PL4 |
Protein Properties | Length: 652 Molecular Weight: 73015.7 Isoelectric Point: 6.3531 |
Chromosome | Chromosome/Scaffold: 3 Start: 563245 End: 566645 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 3 | 615 | 0 |
KKKMKLSSQGPYVTLDNGLVKLTVVKPQGYITGIAYGGMDNLLDPKSNESSRGYWDINWNLPGGQDIYDLLKGAEYSVVQMNKEYLEVSFKNTYDPSSVG GTNLPLSVDIRYIVRAGVSGFYCYGIYERPSGCPAFDIAQTRLVFKLRKDKFHYMAITDEKQRVMPMPEDLLPDRGKQLIVPESVLLVNPINPDLKGEVD DKYMYSMDNKDSGVHGWIGSGPIIGFWTIFPSQEFRNGGPTKQNLTVHTGPTCLAMFQGTHYLGLDMVAQFEEGETWKKVFGPVFIHLNSIPDATKAHKL WTDAKKQRLFEETLWPYDFVSSPDYVAAKDRGSVSGRLLVQDRYVSGSLIPAKNAYIGLSVATTAGSWQLESKGYQFWVQTDSNGNFTIKNVIPGVYGLH GWVPGFMGDYLNNDQITISEGKQTELGNLTYVPPRDGPTLWEIGFPDRTAIGEFVPDVNPMYVNKLFINSPEKYRQYGLWDRYTDIHPELDQIYTIGISN TKTDWFFAHVDRRGPGNKYVPTTWTIKFNLNSVTTGTYQLRLSIASATRSDLEVHVNHMDTGHLVFQELNLGTDNTVCRHGVHGFYCLFSANFPSTLLVK GDNSIFLTQARGG |
Full Sequence |
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Protein Sequence Length: 652 Download |
MAKKKMKLSS QGPYVTLDNG LVKLTVVKPQ GYITGIAYGG MDNLLDPKSN ESSRGYWDIN 60 WNLPGGQDIY DLLKGAEYSV VQMNKEYLEV SFKNTYDPSS VGGTNLPLSV DIRYIVRAGV 120 SGFYCYGIYE RPSGCPAFDI AQTRLVFKLR KDKFHYMAIT DEKQRVMPMP EDLLPDRGKQ 180 LIVPESVLLV NPINPDLKGE VDDKYMYSMD NKDSGVHGWI GSGPIIGFWT IFPSQEFRNG 240 GPTKQNLTVH TGPTCLAMFQ GTHYLGLDMV AQFEEGETWK KVFGPVFIHL NSIPDATKAH 300 KLWTDAKKQR LFEETLWPYD FVSSPDYVAA KDRGSVSGRL LVQDRYVSGS LIPAKNAYIG 360 LSVATTAGSW QLESKGYQFW VQTDSNGNFT IKNVIPGVYG LHGWVPGFMG DYLNNDQITI 420 SEGKQTELGN LTYVPPRDGP TLWEIGFPDR TAIGEFVPDV NPMYVNKLFI NSPEKYRQYG 480 LWDRYTDIHP ELDQIYTIGI SNTKTDWFFA HVDRRGPGNK YVPTTWTIKF NLNSVTTGTY 540 QLRLSIASAT RSDLEVHVNH MDTGHLVFQE LNLGTDNTVC RHGVHGFYCL FSANFPSTLL 600 VKGDNSIFLT QARGGDSLCG VLYDYLRLEA PATAESPNSL YPPIEYVHNT G* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-31 | 332 | 431 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-41 | 443 | 629 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-65 | 6 | 292 | 294 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-72 | 11 | 201 | 191 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Sequence Alignments (This image is cropped. Click for full image.) |
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