| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna20022.1-v1.0-hybrid |
| Family | GH28 |
| Protein Properties | Length: 1427 Molecular Weight: 160655 Isoelectric Point: 7.1595 |
| Chromosome | Chromosome/Scaffold: 3 Start: 7606815 End: 7613085 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 449 | 799 | 0 |
| SAQGGAQLYVPAGKYLTGSFNLTSHFTLYLHKEAVLLASQDPQEWPVLKPLPSYGRGRDAPEGRYASLLFGTNLTDVVITGDNGTIDGQGEFWWNKFHSK KLQYTRPYLIEVMFSSNVQISNLTLINSPSWNVHPIYSSDILVQGLTILAPVSSPNTDGVNPDSCTNVKIEDCYIVSGDDCVAVKSGWDQYGVSFGMPTK QLVIRRLTCVSPYSAAIALGSEMSGGIEDVRAEDIVAVETESGVRIKTAVGRGGYVRDVYVRRMEMHTMKWAFKMSGDYGSHADEGYDKNAFPEIKGIYY RDVVADNVTMAARLEGIEGHPFTGICMSNVTVVLAAKAKKQPWSCSDVKGV | |||
| Full Sequence |
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| Protein Sequence Length: 1427 Download |
| MYFIHPILRF PHPTIHSSSK RRSPDNELMV IQIEEYQSND GLKRDQFSIH FSNKQEFEDI 60 YEGIQMKWKY NSKSKKSNYS SIAGKKQFFE LTFDVKHKEM VMDAYLPYVI ETFKAMKDAE 120 KIVKLHTLPR SDTYTMMRWS AINLEHPAAF ETIAMDTKQK RLLLEDLDRF VKRKEFNQRV 180 GRAWKRGYLL YGPPGTGKSS LIAAIANYLK FDIYDLQLTH LTSDVELRRV LLATTNKSIL 240 VIEDIDCSQL KLQDKSNSSK KNDSESYQLS LSGLLNFTDG LWSGCGEERI IVFTTNHKSK 300 LDPALLRSGR MDMHFHMSYC SHEGFKTLAS TYLGIKEHQP LFDEIKSLLQ KTDVTPAQVA 360 EELMKSEDAN VALQALITRL KEIKKKKEDD KKAKDEAKDK SDSESSFEYN AISCRAHSFS 420 LTDFGAVGDG KTSNTKAFQA AINHLSQFSA QGGAQLYVPA GKYLTGSFNL TSHFTLYLHK 480 EAVLLASQDP QEWPVLKPLP SYGRGRDAPE GRYASLLFGT NLTDVVITGD NGTIDGQGEF 540 WWNKFHSKKL QYTRPYLIEV MFSSNVQISN LTLINSPSWN VHPIYSSDIL VQGLTILAPV 600 SSPNTDGVNP DSCTNVKIED CYIVSGDDCV AVKSGWDQYG VSFGMPTKQL VIRRLTCVSP 660 YSAAIALGSE MSGGIEDVRA EDIVAVETES GVRIKTAVGR GGYVRDVYVR RMEMHTMKWA 720 FKMSGDYGSH ADEGYDKNAF PEIKGIYYRD VVADNVTMAA RLEGIEGHPF TGICMSNVTV 780 VLAAKAKKQP WSCSDVKGVA SGVTPMPCDL LQGDVVNGGC DFPVDVSPAS PSGEAPEDKD 840 PAPSPSEPPL TSAAGPDTRH DIHGRGSSSK EKPKKWKPKP SPLPPPPPPP VVAGAPAPLH 900 TESNVTLRPK NNASSAAKMW MWIIGFGFAF GCVLETEAWI KYSLELVSVK LADWYCLVLL 960 YLMDSLKNIP ALISKWLSTC ASMVVSLLLL FFPGFLKRWL SDPMTLQIDE YHGISSRNQL 1020 FGALELYLQN KISPSTRLLK IAQTRKDSIF STHFSDNQEF EDVYEDIQLK WKFNIISKES 1080 NHHPSLASKR KQYFQLIFDL EQKEKVMNSY LPYVLETFKA MKEERKLIKL HTLVRVDPYK 1140 IRWDAINLEH PATFETLAMD LELKTSVLED LEKFVKRKEF YQRVGRAWKR GYLLYGPPGT 1200 GKSSLVAAMA NYLKFDIYDL QLTHLKSDME LRKALIATTN KSILVIEDID CSQAELQDRN 1260 SGKGSRKNES EGQQVSISAH INTVSDWAWW SLITLSGLLN FTDGLWSSCG EERIFIFTTN 1320 HKSKLDPALL RSGRMDMHIH MSYCSYEGFK TLASNYLGVC DHPLFENIES LLKNTKITPA 1380 QIAEALMKSE DAEVALQGLI TVLKEKRYKG DEYLDEGEGE HLTYFI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-22 | 417 | 808 | 408 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 4.0e-26 | 416 | 866 | 466 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-26 | 418 | 809 | 407 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-32 | 519 | 801 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-56 | 419 | 696 | 303 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005524 | ATP binding |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 420 | 785 | 29 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 420 | 785 | 29 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 420 | 785 | 29 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 420 | 785 | 29 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 2e-18 | 413 | 757 | 151 | 533 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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