Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna20176.1-v1.0-hybrid |
Family | AA7 |
Protein Properties | Length: 525 Molecular Weight: 58595 Isoelectric Point: 9.3361 |
Chromosome | Chromosome/Scaffold: 3 Start: 8524665 End: 8526239 |
Description | FAD-binding Berberine family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 67 | 516 | 0 |
NLRFSNNSTPKPETIITPFDESHVQAAVICSKKNGLQIRSRSGGHDYEGLSYVSRAPFIIIDLFNLRSIDVDIENESAWVKSGATLGEVYYSIAQKSKVY GFPAATCPTVGVGGHISGGGIGTMFRKYGLASDNVIDARIVDVNGRILDRKSMGEELFWAIRGGGGSSFGVILAWKLRLVPVPLTVTVCHITKTKEQGAT KLLLKWQNIADKLPEELFIRPVIRSGDKTITVEFGSVFLGPVEKLFHLMQENFPQLSLGRSHCTEMSWIQSVLDFAGYSIHESLEILLKRRQFSIIFKAK SDFVTEPISEAGLEGLWQRLVEANTSFMILTPYGGKMSEISDSETAFPHRRGNIYEIQYMVVWDDGKDTEKYVGFMRRLYAYMAPYVSKSPRAAYLNYRD LDLGRNNNGNTSYAQASIWGLKYFKNNFRKLVHVKTLVDPGNFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 525 Download |
MKTSHAKLFP LLFILLNSAW SIASSSISES FVQCLSSHIQ NSNSSNEIIL TRTSSAYPSV 60 LESSIQNLRF SNNSTPKPET IITPFDESHV QAAVICSKKN GLQIRSRSGG HDYEGLSYVS 120 RAPFIIIDLF NLRSIDVDIE NESAWVKSGA TLGEVYYSIA QKSKVYGFPA ATCPTVGVGG 180 HISGGGIGTM FRKYGLASDN VIDARIVDVN GRILDRKSMG EELFWAIRGG GGSSFGVILA 240 WKLRLVPVPL TVTVCHITKT KEQGATKLLL KWQNIADKLP EELFIRPVIR SGDKTITVEF 300 GSVFLGPVEK LFHLMQENFP QLSLGRSHCT EMSWIQSVLD FAGYSIHESL EILLKRRQFS 360 IIFKAKSDFV TEPISEAGLE GLWQRLVEAN TSFMILTPYG GKMSEISDSE TAFPHRRGNI 420 YEIQYMVVWD DGKDTEKYVG FMRRLYAYMA PYVSKSPRAA YLNYRDLDLG RNNNGNTSYA 480 QASIWGLKYF KNNFRKLVHV KTLVDPGNFF RNEQSIPVFS SGRK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 7.0e-15 | 78 | 244 | 175 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 1.0e-15 | 460 | 517 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 2.0e-20 | 78 | 215 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 29 | 517 | 5 | 511 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 24 | 517 | 6 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 24 | 517 | 6 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 29 | 517 | 9 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 29 | 517 | 9 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |