Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna20228.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 42662.5 Isoelectric Point: 8.1619 |
Chromosome | Chromosome/Scaffold: 1 Start: 16416929 End: 16418526 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 389 | 0 |
ACGTSSDSSEIYVPKGRYLLGAMAFKGDCNSHVTFRIDGTLVASPDYRVLGQANNWFSFEGVSGVTIIGGALDAKGSALWACKLSTKTTSCPNGATTLSF TNSKDIRVEGLMSLNSQMFHIVINGCQDVLIQGVKVIAAGNSPNTDGIHVQFSKNVAIFDTSIKTGDDCVSIGPGTKDLWMERIFCGPGHGISIGSLAKD LVEEGVQNVTLKNAIFKGTQNGLRIKSWARPSTGFVQGVQFLDVKMINVQNPIIIDQNYCPHNLNCPGQVSGVKVSDVLYQNIRGTSATAVAIKLDCSAE NPCSGVRLENVNLTCRKQAIQSYCTNVNGK |
Full Sequence |
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Protein Sequence Length: 401 Download |
MTKLTSCFAI VVFISLHILY QSSASGDQNS TSTYNVLKFG AKRNGVTDST QAFLETWSAA 60 CGTSSDSSEI YVPKGRYLLG AMAFKGDCNS HVTFRIDGTL VASPDYRVLG QANNWFSFEG 120 VSGVTIIGGA LDAKGSALWA CKLSTKTTSC PNGATTLSFT NSKDIRVEGL MSLNSQMFHI 180 VINGCQDVLI QGVKVIAAGN SPNTDGIHVQ FSKNVAIFDT SIKTGDDCVS IGPGTKDLWM 240 ERIFCGPGHG ISIGSLAKDL VEEGVQNVTL KNAIFKGTQN GLRIKSWARP STGFVQGVQF 300 LDVKMINVQN PIIIDQNYCP HNLNCPGQVS GVKVSDVLYQ NIRGTSATAV AIKLDCSAEN 360 PCSGVRLENV NLTCRKQAIQ SYCTNVNGKS VGTVQTSSCL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-85 | 61 | 386 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 6.0e-86 | 22 | 394 | 379 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-92 | 7 | 400 | 404 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-100 | 8 | 393 | 394 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-135 | 1 | 400 | 401 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-17 | 128 | 374 | 124 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.00000000000002 | 128 | 386 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000000002 | 128 | 386 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000000002 | 128 | 386 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000000000002 | 128 | 386 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |