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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna20388.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 885 Molecular Weight: 98312.1 Isoelectric Point: 6.0556 |
Chromosome | Chromosome/Scaffold: 3 Start: 15521741 End: 15530694 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 588 | 874 | 0 |
ITVDQSGKGNFTKVQSAIDAVPSNNKHWVCIKISSGTYREKVKIPSDKPYIILKGENKRRTQIVWDDIGPVDRSATFISEAPSITIKSITFANSYNNPFN RYRQITQALAAMISGDKTLFYKCGFFGFQDTLWAVEGRQFYKKCTIQGAIDFIFGHAQAVFQGCAISVLAGNLQPGGIGYITAHGRDNPDESGGFIFNEC MVHGTGLTYLGRAWRPYARVIFYRSNLSNIVVPEGWDGWQALGHEEQLTFGEYGCYGAGANTSKRVSWERKLGPDMVQQFTSLNFID |
Full Sequence |
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Protein Sequence Length: 885 Download |
MIVANMSILD KGGGFATHCI IVDVLDMSTD LLPSATSVPM EIYGEERSVV KTDCGDSSKM 60 NSLGQGTKPS SNSSNAKLLP PDWLSNVVSI LETILQNGDT SWVFGERKGL EAVMQSFILP 120 SMPLYVSVGQ SISVVSSLVD MYAHCGTLMN AYMYNSAGNK SLSFWTIMIN LFGMHGQNLF 180 KRLLLDQKSV PDYLISLVQV FDINGQMETD KGLANNSEEI CLLIAILIIQ LHLNEGIEIC 240 KESDVIIGSA LEFEKLWKTG TGSSVCSFAD QKSLASSLQR HLSDNLSQLI EKTSSNLEIV 300 SLIQQCLSRR FLSGEVADFI KSNPELSFMR YSADSLHSRD YDLFYMRNIK APKQIMEALS 360 SSANGKAVKE YTNIRIRDVA LDTQSLALGF ELLFASLSFI KVARMEMFGN VLNQGVNYKD 420 IIVSEARNQG HKLHDQVFEF SFQLNHANAC AISSNYGNGE IRRLVQGTNE TCSAHAHAHA 480 HAIIRMGKAD FSLEEIEQLL FLNVNFQFIE ATWASKLNGD SLVIMGGDLY RPVTIDQLAI 540 LRIQMSWYGA VDATLAMSLE FELEEKFLLD YDSIYRLYGQ KKLATYTITV DQSGKGNFTK 600 VQSAIDAVPS NNKHWVCIKI SSGTYREKVK IPSDKPYIIL KGENKRRTQI VWDDIGPVDR 660 SATFISEAPS ITIKSITFAN SYNNPFNRYR QITQALAAMI SGDKTLFYKC GFFGFQDTLW 720 AVEGRQFYKK CTIQGAIDFI FGHAQAVFQG CAISVLAGNL QPGGIGYITA HGRDNPDESG 780 GFIFNECMVH GTGLTYLGRA WRPYARVIFY RSNLSNIVVP EGWDGWQALG HEEQLTFGEY 840 GCYGAGANTS KRVSWERKLG PDMVQQFTSL NFIDSEGWLI NQPS* 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 9.0e-82 | 588 | 879 | 292 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-82 | 573 | 881 | 320 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 5.0e-85 | 577 | 879 | 305 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 5.0e-106 | 586 | 883 | 299 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 1.0e-152 | 587 | 883 | 298 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.99993e-41 | 588 | 879 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-35 | 590 | 879 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-19 | 585 | 868 | 3 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-19 | 585 | 868 | 3 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-19 | 585 | 868 | 3 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Sequence Alignments (This image is cropped. Click for full image.) |
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