Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna20575.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 941 Molecular Weight: 103552 Isoelectric Point: 8.1111 |
Chromosome | Chromosome/Scaffold: 1 Start: 20183832 End: 20191411 |
Description | AMP-dependent synthetase and ligase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 639 | 863 | 0 |
KDACASTSASTVLVPKGTYKLKEASFKGPCKAPIELQVKGTLQAPQDSAQLSKPDTWIEFSYLDNFTLSGGGTFDGQGHKAWLANDCHKNSKCTSIAINM RFYSVKNSLVKDVTSLNSKNFHVNIIGCERLTFQHFIVTAPGNSTNTDGIHIGRSIGVNITDANIKTGDDCISIGDGTKQLTITNVTCGSGHGISIGSLG KYQKEDPVSGINISNCTLSDTSNGA |
Full Sequence |
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Protein Sequence Length: 941 Download |
MFSAKVEEGR KGQNGKPSVG PVYRNLLSKN DFPPPHPEIN TAWDVFSQSA QKFPGNRMLG 60 WRKIVDGKIG PYVWKTYKEV YEEVLLVGSA LRASGVELGS RIGIYGSNCP QWIMAMEACN 120 AHSLICVPLY DTLGPGAVNF IIDHAEVDVV FIQDKKVKQL LSPDCTSSQR LKDEEKDKAV 180 QIGMKPYSWS EFTEMGKQNP SDIFPPQPET IGSIMYTSGT TGDPKGVVLT HENAAYGVRG 240 VDLFMEQFED KMTVDDVYLS FLPLAHILDR IIEEYFFRTG ASVGYYHGDL NALGDDMMEL 300 KPTLLAGVPR FKLISGIKQG VQQLNPRRQK IFDILYKYKR AWMNMGFKNR NASPIADLLA 360 FRKIKNRLGG RIRLIISGGA PLSAEIEEFL RVTCCCFVVQ GYGLTETVGP TTLGYPDEMC 420 MIGVVGTVSV FNELRLEEVP DMGYDPLGDP SCGEICVRGK TVFAGYHKSP ELTREAIKDG 480 WFHTGDIGQI LSNGSIKIID RKKNLIKLSQ GEYVALEYLE NVYGISSVID DIWVYGNSFK 540 SKIVAVVVPE ENSTKKWADL NGHTGSFSDL CSLDQLKNYI LEELKLIAER NKLRGFEYIK 600 GIIIEPRPFD MERDLVTATL KKKRNQLLKY YQVLANAWKD ACASTSASTV LVPKGTYKLK 660 EASFKGPCKA PIELQVKGTL QAPQDSAQLS KPDTWIEFSY LDNFTLSGGG TFDGQGHKAW 720 LANDCHKNSK CTSIAINMRF YSVKNSLVKD VTSLNSKNFH VNIIGCERLT FQHFIVTAPG 780 NSTNTDGIHI GRSIGVNITD ANIKTGDDCI SIGDGTKQLT ITNVTCGSGH GISIGSLGKY 840 QKEDPVSGIN ISNCTLSDTS NGAPSKIKIS NVSFKNIRGT SSTPVAVKIA CAQGLPCQKV 900 EMTDIDLKYN GNQGSITSQC SNVKPTVTRV ANTLACATKH * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02736 | PLN02736 | 2.0e-171 | 2 | 632 | 648 | + long-chain acyl-CoA synthetase | ||
PLN02430 | PLN02430 | 0 | 2 | 633 | 643 | + long-chain-fatty-acid-CoA ligase | ||
PLN02861 | PLN02861 | 0 | 2 | 632 | 642 | + long-chain-fatty-acid-CoA ligase | ||
cd05927 | LC-FACS_euk | 0 | 70 | 632 | 567 | + Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS). The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. | ||
PLN02614 | PLN02614 | 0 | 2 | 632 | 642 | + long-chain acyl-CoA synthetase |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0008152 | metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ni2_A | 1e-19 | 76 | 536 | 51 | 466 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 3a9v_A | 1e-19 | 76 | 536 | 51 | 466 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 3a9u_A | 1e-19 | 76 | 536 | 51 | 466 | A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase |
PDB | 3ies_A | 5e-19 | 76 | 522 | 52 | 457 | A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase |
PDB | 3ier_A | 5e-19 | 76 | 522 | 52 | 457 | A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase |
Sequence Alignments (This image is cropped. Click for full image.) |
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