Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna21405.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 467 Molecular Weight: 50468.8 Isoelectric Point: 9.3763 |
Chromosome | Chromosome/Scaffold: 7 Start: 18432900 End: 18436241 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 67 | 345 | 0 |
VKVMQNGGGNFKTITDAVKSVPNGNTNRVIIYIGGGTYNEKITIPREKPFITFFGDPKNMPKLTFNGDNKKYGTVYSATLAVESDYFIGVNLNIINSSPR PDASRTGAQAVALRVSGTKAALYNCKMYGFQDTVCDDKGYHLFKDCYIEGTVDFIFGSGKSIYLNTDLRVLGDNGMTVITAQARDGKTEDTGYSFVHCNI TGTGKGTFLGRAWRASPQVVYAYTAIGDVIAPEGWTDNRHPEYDRSVNFGEYKNMGPGSSMSKRVKFTKQLSDADANLS |
Full Sequence |
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Protein Sequence Length: 467 Download |
MAGRKTWMGI HAALMTILLT APAAMAGGNT VIPADKSGVN KWFNDIVNQK SGLDSQLTKA 60 EQGTKVVKVM QNGGGNFKTI TDAVKSVPNG NTNRVIIYIG GGTYNEKITI PREKPFITFF 120 GDPKNMPKLT FNGDNKKYGT VYSATLAVES DYFIGVNLNI INSSPRPDAS RTGAQAVALR 180 VSGTKAALYN CKMYGFQDTV CDDKGYHLFK DCYIEGTVDF IFGSGKSIYL NTDLRVLGDN 240 GMTVITAQAR DGKTEDTGYS FVHCNITGTG KGTFLGRAWR ASPQVVYAYT AIGDVIAPEG 300 WTDNRHPEYD RSVNFGEYKN MGPGSSMSKR VKFTKQLSDA DANLSSASTS FRIDKEKMER 360 GGFVVLMMCL LCLVSVVPMA KGADTTPSEC KREKNLLVGA CKPVIAGFNP SAACCQRVRV 420 THAECVCPYL SPKVANLINV NRSIRQIQGC GRTVPHNFKC GSVTTP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 4.0e-71 | 66 | 336 | 271 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 3.0e-73 | 63 | 335 | 282 | + pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-78 | 64 | 336 | 283 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 9.0e-79 | 13 | 336 | 337 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 10 | 336 | 332 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 2e-34 | 69 | 333 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 1e-33 | 67 | 333 | 9 | 281 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 9e-21 | 66 | 342 | 7 | 325 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 9e-21 | 66 | 342 | 7 | 325 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 9e-21 | 66 | 342 | 7 | 325 | A Chain A, Pectin Methylesterase From Carrot |