Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna21420.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 1423 Molecular Weight: 156245 Isoelectric Point: 6.7418 |
Chromosome | Chromosome/Scaffold: 7 Start: 18485236 End: 18491807 |
Description | disease resistance family protein / LRR family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 394 | 0 |
AAACSSRQTAFMYVPKGRFLLKAAVFRGPCKSRVLVQIDGTLIAPTDYRALGNSGYWILFIKINGLGVYGAKLDAKGAGFWACRKSGKSCPVAARSITFN WVNNLVISDLVSINSQETHLVINSCKNVVVRNVKLSAPADSPNTDGIHVQGSTWVTITGATLMTGDDCVSIGPGTKHLHMNKIMCGPGHGVSIGSLGKDV KEAGVQDVTLTNAVFSGSDNGVRIKTWARASTGFVTNILFQNIVMRNVKNPVIIDQNYCPSKNCPNQSSGVKISQVTYKNIQGTSATAEAVTFDCSPSNP CRRIKLQDIKLTYLNKPE |
Full Sequence |
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Protein Sequence Length: 1423 Download |
MNNKPDGCHI ESQVLLENRL NDLEVIMDRI DAHVSPATPP PDTPPGFPPP ATYNVMKYGA 60 KADGITDSTQ AFLKTWAAAC SSRQTAFMYV PKGRFLLKAA VFRGPCKSRV LVQIDGTLIA 120 PTDYRALGNS GYWILFIKIN GLGVYGAKLD AKGAGFWACR KSGKSCPVAA RSITFNWVNN 180 LVISDLVSIN SQETHLVINS CKNVVVRNVK LSAPADSPNT DGIHVQGSTW VTITGATLMT 240 GDDCVSIGPG TKHLHMNKIM CGPGHGVSIG SLGKDVKEAG VQDVTLTNAV FSGSDNGVRI 300 KTWARASTGF VTNILFQNIV MRNVKNPVII DQNYCPSKNC PNQSSGVKIS QVTYKNIQGT 360 SATAEAVTFD CSPSNPCRRI KLQDIKLTYL NKPERGGCSY TATVFEIRSV MPASYTAMVP 420 FINRQKETGT TLRIEPVKVE GDPNATSGTL DQTRNKRMGR IMGATLLVWF LIIATTSVSL 480 CNGNPGVACK ESERLALLML KQDLTDPSNR LSSWAGESDC CQWTGVVCDN LTGNVRELQL 540 DDPHFNSSLG GKVNPSLLNL THLTYLNLSY NNFQTEIPSF FGSLESLTHL DLSQATFVGL 600 IPHELGNLSS LRDLRLSSNY MLKVDNLLWI SGLSQLEHLD MSFLDLSKAS DHWLPAIQML 660 PSLVELHMSD CSLQYIPLLP IINLTSLAIL DLSYNLFNSF MPGWVFSFRT LVSLILSGCG 720 FQGPIPSSST PHNITSLREI SLFANQLTNP IPEWLLNNKD LTLLDLGLNL FSGPIPGGIA 780 NMTSLKVLHL EVNSFTSTIP EWLYSFHNLE SLYIYSNHLH GEISSSIGNL TSIIYLELGY 840 NQFEGTIPNS LGNLSSLESL DFSANQLHGT LPKTIGQLKR LTDLDISSNS FEGVVTEAHF 900 THLTSLKSFR AVGNSMTLKT SRDWLPPFQL GSMWLDHWRL GLELPLWLRT QTQLQSLSLS 960 GTGISGTIPT WFWNISSHLS YLNLADNQLH GEIQYISSGS ASVIDLSSNQ FNGSLPLVSS 1020 NVVRLDLSNS SFSGSVIHFF CDAKTGPKLL TFLHLGNNYL SGNIPDCWMN WLYLEAISLE 1080 NNNLTGNIPS SMGYLRGLAV LHLRNNQFSG ELPQYLQNCT RLVVVDLSEN QLSGVLPMWI 1140 GKSSSNLVVL SFRSNMFQGV ISDQLCNLSR LQILDFADND LSGTIPRCFG NFSGIANLSM 1200 LSASRRYFDN YGVYGENTFL VTKGRVEEFG KILGFVASID LSSNNLSGEI PEELTNLFSL 1260 QTLNISANHL TGRIPPMIGR LKQLESLDFS RNQLSGEIPP SIMFLTFLSH LNLSHNNLTG 1320 QIPQSTQLQS LDESSFLGNE LCGSPLSKNC SASKVTPPTI ERERGYDLLD DKWFYLSLGL 1380 GFAVGFWSIL GSLLVNMPWS FAFSRFLNSI VLKLYAVIVE YV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-94 | 54 | 387 | 341 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-94 | 55 | 391 | 346 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-95 | 53 | 389 | 342 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-95 | 80 | 393 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02155 | PLN02155 | 3.0e-150 | 53 | 389 | 338 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005515 | protein binding |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3rj0_A | 0 | 696 | 1355 | 81 | 750 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3rj0_A | 4e-38 | 502 | 1137 | 18 | 718 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3riz_A | 0 | 696 | 1355 | 81 | 750 | A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain |
PDB | 3riz_A | 4e-38 | 502 | 1137 | 18 | 718 | A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain |
PDB | 3rgz_A | 0 | 696 | 1355 | 84 | 753 | A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain |