Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna21593.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 1325 Molecular Weight: 147730 Isoelectric Point: 6.1336 |
Chromosome | Chromosome/Scaffold: 3 Start: 3602638 End: 3612243 |
Description | histidine kinase 2 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 1244 | 1323 | 8e-32 |
WCIADEQTPDGELQAAIDWACGAGGADCSKIQMNQPCFSPNTLKDHASYAFNNYYQKFKHKGASCYFKGAAMITELDPSK |
Full Sequence |
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Protein Sequence Length: 1325 Download |
MEPLDGPNCV IYSRRKLLLL GILGSIAVVW FLLGFHEGIL DIKEKTPEMC GKKAPILQQH 60 FNVSKNQLLA LASLFSESDQ KRGWGRLRVA DRYPAGNIES LECTKETGPG MLLTDGISCA 120 LKAVCSDETE FQEHHKWVGE YVEAEDQCPV QELNIPRMLD LSLLQENSLA KVPQSTVSTN 180 RICQKEALGS GAKVECAKED SHIYCCLMKG CSWVFVGMIL CYQLSGFSLK LWRNQKQKLV 240 HECSCQKKMV QEQSVGSRKQ PEKQQQQTQS PRKVACTWRK KLLIVFVFIG VITSISLFFH 300 LNERDFLWRE ETLANMCDER ARMLQDQFNV SLNHVHALAI LVSTFHHGKH PSAIDQKTFG 360 EYTERTAFER PLTSGVAYAL KVTHAEREQF EREHGWTIKK METDDQTLVQ DFLPESLDPA 420 PIQDEYAPVI FSQETVSHIV SIDMMSGKDD RENILRARST GKGVLTSPFK LLKSNHLGVV 480 LTFAVYNIDL PPDATSEERI QATVGYLGAS YDVPSLVEKL LHQLASKQTI VVNVYDTTNA 540 SYLINMYGTD VVDTGLLHIS GLDFGDPQRK HEMHCRFKHK PPFPWTAVSA SVGVLVITLL 600 VGHIFHAAIS RIAKVEADFC EMMELKVRAE AADVAKSQFL ATVSHEIRTP MNGVLGMLQM 660 LMDTNLDANQ QDYAETAHAS GRDLISLINE VLDQAKIESG RLELETLPFD LRSVLDNVLS 720 LFSGKTNEKG IELAVYVSNL VPEVVIGDPG RLRQIITNLV GNCIKFTHDK GHIFVSVHLA 780 DEVRGPPDLM DEVLRQGLNL VGDHSNKTYN TLSGFPVVDR WKSWERFKTL SSTTVEEPDM 840 IKLLVTVEDT GVGIPLDAQS RIFTPFMQAD SSTSRTYGGT GIGLSISKRL VDLMCGEIGF 900 VSEPGIGSTF SFTGSFERGN TSSLDTKWPQ YEPAVSEFQG LRALVIDKRI TRTEVTRYHM 960 QRLGITADIA SNLESACSYL SSTSKTSLST CLAMVLIDKD VWDKETGLTF HQSVKEHRQN 1020 CSVGSPLNFP KIFLLATSIS ATERNELKSS GLVDNVLMKP LRLSVLIACF QEALVSGKKR 1080 LVNIKKPTLG KLLQGRKILV VDDNAVNRRV AEGALKKYGA IVTCVDSGKT ALDMLKPPHN 1140 FDACFMDLQM PEMDGFEATR RIRCMENEVN EKIASGEAPI EMFGNVEYWH TPILAMTADV 1200 IQASNEECKK CGMDDYVSKP FEEEQLYTAV AKFFESVDAD YEQWCIADEQ TPDGELQAAI 1260 DWACGAGGAD CSKIQMNQPC FSPNTLKDHA SYAFNNYYQK FKHKGASCYF KGAAMITELD 1320 PSKH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR02956 | TMAO_torS | 5.0e-13 | 1093 | 1232 | 140 | + TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. | ||
PRK15347 | PRK15347 | 3.0e-15 | 1097 | 1226 | 130 | + two component system sensor kinase SsrA; Provisional | ||
PRK15347 | PRK15347 | 1.0e-42 | 621 | 912 | 293 | + two component system sensor kinase SsrA; Provisional | ||
TIGR02956 | TMAO_torS | 1.0e-64 | 626 | 1078 | 460 | + TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. | ||
PRK11107 | PRK11107 | 1.0e-101 | 626 | 1262 | 651 | + hybrid sensory histidine kinase BarA; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0000155 | phosphorelay sensor kinase activity |
GO:0000156 | phosphorelay response regulator activity |
GO:0000160 | phosphorelay signal transduction system |
GO:0005524 | ATP binding |
GO:0006355 | regulation of transcription, DNA-dependent |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3t4t_B | 0 | 301 | 580 | 1 | 269 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 3t4t_A | 0 | 301 | 580 | 1 | 269 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 3t4s_B | 0 | 301 | 580 | 1 | 269 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |