Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna21638.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 406 Molecular Weight: 43184.2 Isoelectric Point: 8.0873 |
Chromosome | Chromosome/Scaffold: 3 Start: 3516364 End: 3517987 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 391 | 0 |
KDACAATTPSRVIVPKGTFQLKGAVFKGPCKAPITVQVDGILQAPPIEAQLANKEFWVQFLEVERLTVSGTGTFDGQGQNSWKDNDCNKNPNCGGLAINV RFDKVKNSLVRDVTSLNSKNFHFNILGCEHLTFQHVTIKAPGDSPNTDGIHMGRSTGINITDMNIGTGDDCISVGDGTRQLTVSKVSCGPGHGISIGSLG RYDNEDDVSGLNIRDCTLSNTLNGVRIKTFPASPKATTASDIHFEKITMNNVANPVLIDQEYCPWGQCNKQIPSKVKISNVSFKNIIGTTSTAEALKIVC AKGLHCDQVVLSDIDLKLSGKGTLTSHCANVQPT |
Full Sequence |
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Protein Sequence Length: 406 Download |
MGGHNLVLII FSVFLLSSSA YASRVAQFLA PGDFDVTSPK YGGKPNTDIS QPLANAWKDA 60 CAATTPSRVI VPKGTFQLKG AVFKGPCKAP ITVQVDGILQ APPIEAQLAN KEFWVQFLEV 120 ERLTVSGTGT FDGQGQNSWK DNDCNKNPNC GGLAINVRFD KVKNSLVRDV TSLNSKNFHF 180 NILGCEHLTF QHVTIKAPGD SPNTDGIHMG RSTGINITDM NIGTGDDCIS VGDGTRQLTV 240 SKVSCGPGHG ISIGSLGRYD NEDDVSGLNI RDCTLSNTLN GVRIKTFPAS PKATTASDIH 300 FEKITMNNVA NPVLIDQEYC PWGQCNKQIP SKVKISNVSF KNIIGTTSTA EALKIVCAKG 360 LHCDQVVLSD IDLKLSGKGT LTSHCANVQP TIARVPPPLA CATKA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-77 | 26 | 396 | 376 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-83 | 41 | 398 | 371 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 9.0e-86 | 34 | 404 | 374 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-112 | 61 | 388 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-124 | 34 | 400 | 372 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-18 | 125 | 389 | 113 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-16 | 58 | 388 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 58 | 388 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 58 | 388 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-16 | 58 | 388 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |