Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna21702.1-v1.0-hybrid |
Family | GH19 |
Protein Properties | Length: 591 Molecular Weight: 67144.8 Isoelectric Point: 8.5774 |
Chromosome | Chromosome/Scaffold: 4 Start: 7718983 End: 7731166 |
Description | homolog of carrot EP3-3 chitinase |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 453 | 590 | 0 |
GHASVDFCYIEEINKDTYCDGSRTDYPCNPAKQYYGRGPLQLTWNYNYGAAGNAIGFDGLNSPETVASDPVIAFKTGLWFWMNNVHSVISQGFGATTRAI NGAVECDGKSPDTVQARVNYYTDYCTQFNVAPGDNLYC |
Full Sequence |
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Protein Sequence Length: 591 Download |
MEGKNPKTIF TDRCQAMANA IEKVFPETRH RLCLWHISKN AGDNLKSHYR NPEFSELFRK 60 WLFGHVTKYE FESTWKEIIE KFDFTEKEKT WLKTLYDLRE KWCALFSKDT FSAGILSTQR 120 SESTNNVFTL MSTKTLSLTE FVDHYDKQAE KMRSSELEET FRCNNGIPSR AAKSSGIKKQ 180 AGMVYTRKIY NLFEFEFIAS LAVKMEEARS DGTLQKFELN EEGHKRVYTV EFNSSNKSIS 240 CSCQMYESMG WLCRHALRVS NVKNITQIPA EYILKRWTKD AKKGVKEDSA SLQVKQKSTL 300 IEAEDLIEKN MKKLVIEGDV NEGINEGYDA NTSNGGTHKK GPLCGEQPIL NPAGVWPKGM 360 SNKRMKAAME KKQNKKAPKG QGSEESSQLS GAEVKRKREE SSQDSYAELR SQLRAILRRL 420 RWYDVIRLPV FRGSRVPSTF RAQVEENLHG DGGHASVDFC YIEEINKDTY CDGSRTDYPC 480 NPAKQYYGRG PLQLTWNYNY GAAGNAIGFD GLNSPETVAS DPVIAFKTGL WFWMNNVHSV 540 ISQGFGATTR AINGAVECDG KSPDTVQARV NYYTDYCTQF NVAPGDNLYC * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00442 | lysozyme_like | 6.0e-9 | 462 | 558 | 101 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
pfam10551 | MULE | 6.0e-14 | 1 | 41 | 41 | + MULE transposase domain. This domain was identified by Babu and colleagues. | ||
PLN03097 | FHY3 | 6.0e-50 | 1 | 312 | 318 | + Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional | ||
pfam00182 | Glyco_hydro_19 | 2.0e-62 | 439 | 590 | 180 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 2.0e-67 | 451 | 590 | 161 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0008270 | zinc ion binding |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3hbh_A | 8.00141e-43 | 454 | 590 | 65 | 204 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
PDB | 3hbe_X | 8.00141e-43 | 454 | 590 | 65 | 204 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
PDB | 3hbd_A | 8.00141e-43 | 454 | 590 | 65 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 2z38_A | 1e-37 | 459 | 590 | 87 | 240 | A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
PDB | 2z37_D | 1e-37 | 459 | 590 | 84 | 237 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
Sequence Alignments (This image is cropped. Click for full image.) |
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