Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna21704.1-v1.0-hybrid |
Family | GH19 |
Protein Properties | Length: 260 Molecular Weight: 27768.9 Isoelectric Point: 4.9722 |
Chromosome | Chromosome/Scaffold: 4 Start: 7734552 End: 7735503 |
Description | homolog of carrot EP3-3 chitinase |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 76 | 259 | 0 |
AGSDCAGKSFYTRQAFLDALGSYTDFATTGSADDNKREIAAFFAHVTHETGHFCYVEEIEKATYCDTSFTNYPCNPAKQYYGRGPLQLTWNYNYGAAGNA IGFDGLNSPETVASDSVVAFKTGLWFWMNNVHSVISQGFGATTRAINGAVECDGKAPDKVQARINYYKDYCTQLNVSPGENLYC |
Full Sequence |
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Protein Sequence Length: 260 Download |
MAFQVTIRTK LFFFTILGLA LVAQIATAQN CGCAADLCCS EFGYCGTGDA YCGKGCQAGP 60 CTTTTTPTPT TGGSSAGSDC AGKSFYTRQA FLDALGSYTD FATTGSADDN KREIAAFFAH 120 VTHETGHFCY VEEIEKATYC DTSFTNYPCN PAKQYYGRGP LQLTWNYNYG AAGNAIGFDG 180 LNSPETVASD SVVAFKTGLW FWMNNVHSVI SQGFGATTRA INGAVECDGK APDKVQARIN 240 YYKDYCTQLN VSPGENLYC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00187 | Chitin_bind_1 | 2.0e-7 | 28 | 57 | 30 | + Chitin recognition protein. | ||
smart00270 | ChtBD1 | 1.0e-7 | 26 | 57 | 32 | + Chitin binding domain. | ||
cd00442 | lysozyme_like | 4.0e-9 | 148 | 227 | 80 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
pfam00182 | Glyco_hydro_19 | 1.0e-87 | 78 | 259 | 216 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 6.0e-95 | 76 | 259 | 217 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0008061 | chitin binding |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3hbh_A | 0 | 76 | 259 | 18 | 204 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 3hbe_X | 0 | 76 | 259 | 18 | 204 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 3hbd_A | 0 | 76 | 259 | 18 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 2cjl_B | 0 | 83 | 259 | 16 | 204 | A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes |
PDB | 2cjl_A | 0 | 83 | 259 | 16 | 204 | A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes |