| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna22509.1-v1.0-hybrid |
| Family | PL1 |
| Protein Properties | Length: 209 Molecular Weight: 22716.5 Isoelectric Point: 8.6051 |
| Chromosome | Chromosome/Scaffold: 6 Start: 2322468 End: 2323094 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 3 | 125 | 2.8026e-45 |
| DGDAISIFGSKHIWIDHNSLSNCDDGLVDVVQASTAVTISNNLFKHHDKVMLLGHSDAYTQDKVMQVTVAYNRFGQGLVQRLPHCRHGSFDIVNNDYPKG WGVYAIGGSANPAINSQGNRFYA | |||
| Full Sequence |
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| Protein Sequence Length: 209 Download |
| MADGDAISIF GSKHIWIDHN SLSNCDDGLV DVVQASTAVT ISNNLFKHHD KVMLLGHSDA 60 YTQDKVMQVT VAYNRFGQGL VQRLPHCRHG SFDIVNNDYP KGWGVYAIGG SANPAINSQG 120 NRFYADAVKH PYTNQVTKRI VGSESEWKRW NWRSSGDLFL NGAYFVPSGD ASSAAYVKAS 180 STLAKPASMV RAMTANAGVL TCRKDQVC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-19 | 5 | 123 | 131 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-50 | 2 | 123 | 130 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-52 | 2 | 123 | 131 | + Amb_all domain. | ||
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 3 | 201 | 149 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 3 | 201 | 149 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 6e-16 | 3 | 123 | 115 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000002 | 5 | 105 | 190 | 317 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 0.0000000000002 | 2 | 143 | 141 | 307 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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