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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna23005.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 623 Molecular Weight: 68313.7 Isoelectric Point: 6.3419 |
Chromosome | Chromosome/Scaffold: 4 Start: 21141023 End: 21146191 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 118 | 443 | 0 |
AACAVESAVVLAPADYCFKITSTIFSGPCKPGLVFQVDGILMTPDGPKAWPKVDSNKQWLVFYRLDQMTFTGSGTIEGNGQKWWDLPCKPHRGPNGSTAS GPCDSPALIRFFMSSNLVVKGLRIQNSPMFHMKFDGCEGVHIERLSISSPKLSPNTDGIHIENTKSVGIYDSMISNGDDCISIGPGCANVDIMGVTCGPS HGISIGSLGVHNSQACVSNITVRNVVIRESDNGLRIKTWQGGTGCVSGILFENINMENVMNCLLVDQYYCTSKGCLNQTSAVYVTDLTYRMIKGTYDVRK PPIHFACSDTVACTNITLSEVELYPY |
Full Sequence |
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Protein Sequence Length: 623 Download |
MEHRTVIILW ISIILVLIQN PSNVQGRYHY HKKSSKGSQS PTPSPESPQS PEPVAPPSTP 60 VAPSTPVVPS TPSIPPNVPS DPYPGDDPTD CIFNVMSYGA VGDGDADDTK AFRDAWKAAC 120 AVESAVVLAP ADYCFKITST IFSGPCKPGL VFQVDGILMT PDGPKAWPKV DSNKQWLVFY 180 RLDQMTFTGS GTIEGNGQKW WDLPCKPHRG PNGSTASGPC DSPALIRFFM SSNLVVKGLR 240 IQNSPMFHMK FDGCEGVHIE RLSISSPKLS PNTDGIHIEN TKSVGIYDSM ISNGDDCISI 300 GPGCANVDIM GVTCGPSHGI SIGSLGVHNS QACVSNITVR NVVIRESDNG LRIKTWQGGT 360 GCVSGILFEN INMENVMNCL LVDQYYCTSK GCLNQTSAVY VTDLTYRMIK GTYDVRKPPI 420 HFACSDTVAC TNITLSEVEL YPYEGELMDD PFCWNAYGTQ ETPTIPPIEC LQDGQPEALA 480 EVAHHLRGRD RNPPSGVASR DDEMETEEIP KSPLRLPPPP TPIRFGKQLK ENMPSLQTAL 540 PPELANNVIR LYRECIRRAK YVGHRQHNTQ LVVDMVRQQF KKNMNETDPD KIQQCKDDAA 600 RGLINHILFE SEKMSGRKFS KT* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-72 | 92 | 446 | 360 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-77 | 86 | 467 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-87 | 94 | 440 | 351 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-88 | 140 | 440 | 302 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-113 | 92 | 475 | 387 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-23 | 154 | 440 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-23 | 154 | 440 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-23 | 154 | 440 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-23 | 154 | 440 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-23 | 154 | 440 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |