Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna23054.1-v1.0-hybrid |
Family | AA3 |
Protein Properties | Length: 595 Molecular Weight: 64803.1 Isoelectric Point: 9.3687 |
Chromosome | Chromosome/Scaffold: 4 Start: 23277471 End: 23281658 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 55 | 585 | 0 |
SSSGHINDYDYIIVGGGTAGCPLAATLSQNFSVLVLERGGVPFANSNVSFLQNFHIALEDISPKSPSQPFVSSDGVISSRARVLGGGSVINAGFYTRASP RFIKRVGWDAKLVNESYPWIEKQIVHEPQHEPYQIAFRDSLLAAGVAPFNGFTYDHLYGTKVGGTIFDRFGRRHSSAELLSSGNPQKLTVLIYATVQKIV FDTSGKTPKAVGVTFKDENGNQHQAFLADKPQSEVLLSSGAIGSPQMLLLSGIGPKADLEKLNIPVVLNNEFVGKGMADNPMNAIFVPSSREEKQTLIQI VGITKMGVYIEASSGFSQSKDSIECNHGIMSAEIGQLSTLPPKQRTPEAIQAFIKRKRDLPHEAFKGGFILQKIANPISKGDLRLHNTNVDDNPDVSFNY FSHPYDLKRCVDGIRIATKVAQSEHFTNYTRVDKQTVEKILNLSVKANVNLIPKNINDTKSLEQFCKDTVITIWHYHGGCHVGTVVSPDNKVLGVDRVRV VDGSTFSESPGTNPQATVLMMGRYMGLKILR |
Full Sequence |
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Protein Sequence Length: 595 Download |
MALVNGALVL KKLIFFVALC LISVLSSSQG KEVYDEFRYP FIKKASSFAS VSSSSSSGHI 60 NDYDYIIVGG GTAGCPLAAT LSQNFSVLVL ERGGVPFANS NVSFLQNFHI ALEDISPKSP 120 SQPFVSSDGV ISSRARVLGG GSVINAGFYT RASPRFIKRV GWDAKLVNES YPWIEKQIVH 180 EPQHEPYQIA FRDSLLAAGV APFNGFTYDH LYGTKVGGTI FDRFGRRHSS AELLSSGNPQ 240 KLTVLIYATV QKIVFDTSGK TPKAVGVTFK DENGNQHQAF LADKPQSEVL LSSGAIGSPQ 300 MLLLSGIGPK ADLEKLNIPV VLNNEFVGKG MADNPMNAIF VPSSREEKQT LIQIVGITKM 360 GVYIEASSGF SQSKDSIECN HGIMSAEIGQ LSTLPPKQRT PEAIQAFIKR KRDLPHEAFK 420 GGFILQKIAN PISKGDLRLH NTNVDDNPDV SFNYFSHPYD LKRCVDGIRI ATKVAQSEHF 480 TNYTRVDKQT VEKILNLSVK ANVNLIPKNI NDTKSLEQFC KDTVITIWHY HGGCHVGTVV 540 SPDNKVLGVD RVRVVDGSTF SESPGTNPQA TVLMMGRYMG LKILRDRLGR AAGI* 600 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
TIGR01810 | betA | 8.0e-23 | 64 | 334 | 308 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. |
TIGR03970 | Rv0697 | 2.0e-24 | 64 | 335 | 314 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. |
COG2303 | BetA | 1.0e-43 | 61 | 592 | 586 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] |
PLN02785 | PLN02785 | 0 | 10 | 594 | 586 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 63 | 587 | 27 | 517 | A Chain A, The Structure Of The Type Iii Effector Avrb Complexed With A High-Affinity Rin4 Peptide |
PDB | 3gdp_A | 0 | 63 | 587 | 27 | 517 | A Chain A, The Structure Of The Type Iii Effector Avrb Complexed With A High-Affinity Rin4 Peptide |
PDB | 3gdn_B | 0 | 63 | 587 | 27 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 63 | 587 | 27 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 63 | 587 | 27 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |