Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna23300.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 511 Molecular Weight: 55280.1 Isoelectric Point: 7.2353 |
Chromosome | Chromosome/Scaffold: 7 Start: 14366503 End: 14368161 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 109 | 420 | 0 |
DAPGGRYASLIFGTNLTDVVITGDNGTIDGQGELWWSKFHSKKLEYTRPYLIEIMFSTNVQISHLTLLNSPSWNVHPIYSSGILVQGLTILAPVRSPNTD GVNRDSCTNVKIEDCYIVSGDDCVAVKSGWDQYGVSFGMPTKQLVIRRLTCVSPYSAAIALGSEMSEGIEDVRAEDIVAVETESGVRIKTAMGRGGYVRR MEMHTMKWAFKMSGDYVKIIQRTRCAAHPSISVVHFEKVKSPRQMDGGDGRNAFPEIKGIRYRDVVADNVTMVAKLEGIAGHPFTGICMSNVTVTLAAKA KKQPWSCADVEG |
Full Sequence |
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Protein Sequence Length: 511 Download |
MKSLLLIHLV VCLLLIGGGD SRKELERSAP SLEYNAMSCR AHSFSITDFG AAGDGKTSNT 60 KAFQAAIDHL SQFSTQGGAQ LDVPAGKYLT DPQEWPVLKP LPSYGRGRDA PGGRYASLIF 120 GTNLTDVVIT GDNGTIDGQG ELWWSKFHSK KLEYTRPYLI EIMFSTNVQI SHLTLLNSPS 180 WNVHPIYSSG ILVQGLTILA PVRSPNTDGV NRDSCTNVKI EDCYIVSGDD CVAVKSGWDQ 240 YGVSFGMPTK QLVIRRLTCV SPYSAAIALG SEMSEGIEDV RAEDIVAVET ESGVRIKTAM 300 GRGGYVRRME MHTMKWAFKM SGDYVKIIQR TRCAAHPSIS VVHFEKVKSP RQMDGGDGRN 360 AFPEIKGIRY RDVVADNVTM VAKLEGIAGH PFTGICMSNV TVTLAAKAKK QPWSCADVEG 420 VARGVTPRPC DLLRDDDSVA SGGCDFPVDV LPIDTVEMKT CSYGSSPGRP SMSSSDVPLP 480 PKNNASTAAE IRFGFAFGCL LLAITNNHMY * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-19 | 44 | 309 | 286 | + polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-22 | 43 | 431 | 411 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-26 | 119 | 418 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-28 | 41 | 307 | 288 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 6.0e-47 | 44 | 312 | 317 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-34 | 45 | 309 | 29 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-34 | 45 | 309 | 29 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-34 | 45 | 309 | 29 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-34 | 45 | 309 | 29 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000003 | 134 | 403 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |