y
Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna23525.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 367 Molecular Weight: 40565.8 Isoelectric Point: 6.666 |
Chromosome | Chromosome/Scaffold: 3 Start: 18548965 End: 18550750 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 68 | 359 | 0 |
IVVDKNGGGNSMTVQGAVDMVPDHNKQRYKIYILPGIYREKVRIPITKPYISFIGNQNQTSETVITWNDKASDKDSNGFELGTYRTATVAIEADYFCATG ITFENSVAAVPGGYGMQGVALRVAGDKAMFYKVRVLGAQDTLLDENGSHYYYQSHIQGSVDFIFGKSRSLYQDCVIQSTAKTYGAIAAHHRDSANEDTGF SFVNCTIIGTGYIYLGRAWGAYSRVIYSYCGIDNIITPPGWSDWNIPPRQRTVEFGEYECRGKGADKRGRVPWLKSFSPAEIVPFLDTKFIY |
Full Sequence |
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Protein Sequence Length: 367 Download |
MGLGVYSASV AACAGLVLLL LLSGFQLGLS QSEAYARSYI SWDDLKVDEQ MVIGLNSRNE 60 QKNETSVIVV DKNGGGNSMT VQGAVDMVPD HNKQRYKIYI LPGIYREKVR IPITKPYISF 120 IGNQNQTSET VITWNDKASD KDSNGFELGT YRTATVAIEA DYFCATGITF ENSVAAVPGG 180 YGMQGVALRV AGDKAMFYKV RVLGAQDTLL DENGSHYYYQ SHIQGSVDFI FGKSRSLYQD 240 CVIQSTAKTY GAIAAHHRDS ANEDTGFSFV NCTIIGTGYI YLGRAWGAYS RVIYSYCGID 300 NIITPPGWSD WNIPPRQRTV EFGEYECRGK GADKRGRVPW LKSFSPAEIV PFLDTKFIYG 360 EQWLRL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-98 | 67 | 365 | 299 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-99 | 67 | 364 | 300 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 2.0e-100 | 63 | 365 | 313 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-117 | 67 | 366 | 303 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 0 | 37 | 366 | 330 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.96182e-44 | 68 | 365 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-38 | 69 | 365 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.00000000008 | 80 | 286 | 46 | 269 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000005 | 66 | 245 | 6 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000005 | 66 | 245 | 6 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |