Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna23948.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 606 Molecular Weight: 66934 Isoelectric Point: 9.3731 |
Chromosome | Chromosome/Scaffold: 6 Start: 34513273 End: 34516214 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 263 | 584 | 0 |
RDACASPWPSRLVVPSGTYRLRGANFKGPCNAPIEVQIQGTLQAPEDGHQLVNSDSWVAFQYIDRLFLTGGGTFDGSQGRNNYRAINVRFDFVTNSAIQD ITSLDSSGFHFNVFMCHDLTFQRLTIQAPKKSSNTDGIHIARSWRINVTDTDIGTGDDCISIGDGTKKLIVTNVNCGPGHGISVGSLGKYSDEQPVYGLV VRNCTFTNTTNGVRIKTWPGSPVTGLASHIHFVDITMNNVQNPIIIDQNYCPGHTCNQQGQSNIKISNIRFRNIRGTSASQVAVNLACSQTLPCEMVELI GIDLAYSGEHNRPILSQCTNVV |
Full Sequence |
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Protein Sequence Length: 606 Download |
MELEESKRFK MQKMKKLYRR GRVARGVLNR IKNEKVRRWI VLEFEEVKPS SSAFLRQHAS 60 PAPLLCSGGV DEAPIWVPRV VLGQIWVPRV VLGQICVPRV GWVWTPVGLI GGRGFLKDLT 120 IVGLESGTHE LLSLKWVRKA VIPPPISDAY FLYLTYLEQA RPSKQCCKRG NFYLWGLRIR 180 GILLKRLPGS KDRPASSPDN KTNKGECPYK MGLKVMNIMA IFMFLLLAAT ANAQPRTIFD 240 VTSATYGGKP NCDITDALAH AWRDACASPW PSRLVVPSGT YRLRGANFKG PCNAPIEVQI 300 QGTLQAPEDG HQLVNSDSWV AFQYIDRLFL TGGGTFDGSQ GRNNYRAINV RFDFVTNSAI 360 QDITSLDSSG FHFNVFMCHD LTFQRLTIQA PKKSSNTDGI HIARSWRINV TDTDIGTGDD 420 CISIGDGTKK LIVTNVNCGP GHGISVGSLG KYSDEQPVYG LVVRNCTFTN TTNGVRIKTW 480 PGSPVTGLAS HIHFVDITMN NVQNPIIIDQ NYCPGHTCNQ QGQSNIKISN IRFRNIRGTS 540 ASQVAVNLAC SQTLPCEMVE LIGIDLAYSG EHNRPILSQC TNVVNPTIVN VRDALACKVQ 600 TTELD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-59 | 238 | 583 | 352 | + polygalacturonase | ||
PLN02793 | PLN02793 | 8.0e-68 | 229 | 574 | 368 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-68 | 218 | 588 | 383 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-93 | 266 | 588 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-94 | 211 | 583 | 394 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000000004 | 350 | 547 | 154 | 344 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.000000000001 | 396 | 544 | 165 | 309 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.00000000002 | 396 | 543 | 153 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000002 | 396 | 543 | 153 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000002 | 396 | 543 | 153 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Sequence Alignments (This image is cropped. Click for full image.) |
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