Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna24220.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 415 Molecular Weight: 45400.5 Isoelectric Point: 8.3877 |
Chromosome | Chromosome/Scaffold: 6 Start: 30984025 End: 30985999 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 113 | 404 | 0 |
CVDRNGCCNFTLVQSAVDAVPALSQKRTVIWINNGIYYEKVTVPSAKPNITFQGQGYFSTAISWNDTANSSHGTFYSGSVQVFGANFIAKNISFMNVAPI PKPGDVGAQAVAIRVSGDQSAFWGCGFFGAQDTLHDDKGRHYFRDCYIQGSIDFIFGNARSLYENCQLVSMANPVAPGAKIINGALTAHGRASNENTGYS FVNCIVGGSGRVWLGRAWRPFSRVVFINTTMTDIIAPEGWNDFNDPTRDQTIFYGEYNCSGAGANLTMRASYVQKLNDTQASPFLNVSFIDG |
Full Sequence |
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Protein Sequence Length: 415 Download |
MNPNIPGSSQ PLQKMMSLKS IPLAFLVAIF AVLWSCKHLI ISNPNSHYLK YFEGLGLTTA 60 SISPIVSLLI PYSIKYNARH HKKHDKKTKK VSICDDFPPG IPPPDTNTTS YLCVDRNGCC 120 NFTLVQSAVD AVPALSQKRT VIWINNGIYY EKVTVPSAKP NITFQGQGYF STAISWNDTA 180 NSSHGTFYSG SVQVFGANFI AKNISFMNVA PIPKPGDVGA QAVAIRVSGD QSAFWGCGFF 240 GAQDTLHDDK GRHYFRDCYI QGSIDFIFGN ARSLYENCQL VSMANPVAPG AKIINGALTA 300 HGRASNENTG YSFVNCIVGG SGRVWLGRAW RPFSRVVFIN TTMTDIIAPE GWNDFNDPTR 360 DQTIFYGEYN CSGAGANLTM RASYVQKLND TQASPFLNVS FIDGNDWLQP MDAN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 4.0e-95 | 103 | 409 | 308 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-100 | 111 | 413 | 312 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-105 | 114 | 410 | 299 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 1.0e-125 | 112 | 410 | 307 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 37 | 413 | 378 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 112 | 409 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9.94922e-44 | 113 | 409 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 5e-21 | 122 | 407 | 18 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 5e-21 | 122 | 407 | 18 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 5e-21 | 122 | 407 | 18 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |