Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna24221.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 354 Molecular Weight: 38661.5 Isoelectric Point: 7.8547 |
Chromosome | Chromosome/Scaffold: 6 Start: 30989878 End: 30992953 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 79 | 324 | 0 |
ANKPNITFQGEGYLWTVIAWNDTAKSSYSTKLSASVHVAGANFIAKNISFKNTAPPPEPGVDDAQAVALRVSGDKAAFWGCGFYGYQDTLNDENGRHYFK DCYIQGTVDYIYGNGQSFYENCQLITIAAAGSIAYITAHGRSNTVRVENTCAGFAFVSCTIDGSGIVWLGRECRRFARVVFANTYMSNIITPEGWNATTS GDEKTVFFGEYKCKSPGANMNKRKPFVHNLTHSQAYSHFLTVSFID |
Full Sequence |
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Protein Sequence Length: 354 Download |
MCLKTTCLTC FVALLVALLA VLFASAHLTT NQNSPSALSI PYAAHHKHEN DDPLPDTTAT 60 SYLCVDQNGH LRKWRFRLAN KPNITFQGEG YLWTVIAWND TAKSSYSTKL SASVHVAGAN 120 FIAKNISFKN TAPPPEPGVD DAQAVALRVS GDKAAFWGCG FYGYQDTLND ENGRHYFKDC 180 YIQGTVDYIY GNGQSFYENC QLITIAAAGS IAYITAHGRS NTVRVENTCA GFAFVSCTID 240 GSGIVWLGRE CRRFARVVFA NTYMSNIITP EGWNATTSGD EKTVFFGEYK CKSPGANMNK 300 RKPFVHNLTH SQAYSHFLTV SFIDGPTGDA QPSLARRIPE PDSTQPPCAR PSS* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-66 | 79 | 325 | 248 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 9.0e-72 | 79 | 325 | 256 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 8.0e-84 | 80 | 325 | 248 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 8.0e-89 | 79 | 325 | 254 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 9.0e-113 | 45 | 325 | 330 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 2e-32 | 55 | 325 | 26 | 300 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 1e-30 | 55 | 325 | 30 | 304 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 4e-17 | 104 | 313 | 81 | 325 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 4e-17 | 104 | 313 | 81 | 325 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 4e-17 | 104 | 313 | 81 | 325 | A Chain A, Pectin Methylesterase From Carrot |