Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna24370.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 480 Molecular Weight: 52469.3 Isoelectric Point: 7.917 |
Chromosome | Chromosome/Scaffold: 4 Start: 24019718 End: 24028592 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 193 | 398 | 0 |
IQDEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIVHGLHIHDCKPTGNALVRSSPSHFGWRTMADGDAISIFGSSHIWVD HNSLSNCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQ GNRYAA |
Full Sequence |
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Protein Sequence Length: 480 Download |
MAVVVLVVVH DALSSHVHVY LSRERKIAMA VSENKKWITA CVSVLLLFCF VAAMSGRVSL 60 DGTPILRNGG TEELQSSSNS SMAPRVNEND DGGLNKHAVE NPDEIAAMVD MSIRNSTERR 120 KLGYFSCGTG NPIDDCWRCD PNWQKNRKRL ADCGIGFGRN AIGGRDGRFY VVTDPNDDDP 180 VNPRPGTLRH AVIQDEPLWI VFKRDMVIQL KQELIMNSFK TIDGRGVNVH IANGACITIQ 240 FVTNVIVHGL HIHDCKPTGN ALVRSSPSHF GWRTMADGDA ISIFGSSHIW VDHNSLSNCA 300 DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYTRDKQ MQVTIAYNHF GEGLIQRMPR 360 CRHGYFHVVN NDYTHWEMYA IGGSADPTIN SQGNRYAAPT NPFAKEVTKR VETSQTQWRG 420 WNWRSEGDLL LNGAFFTPSG AGASAVYARA SSLGAKSSAM VGTITAGAGA LGCRRGRTC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-27 | 218 | 411 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-70 | 211 | 396 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-80 | 205 | 399 | 206 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 131 | 471 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 131 | 471 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-17 | 200 | 396 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000006 | 221 | 397 | 135 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000002 | 221 | 449 | 90 | 334 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |