Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna24477.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 458 Molecular Weight: 50218.5 Isoelectric Point: 5.7638 |
Chromosome | Chromosome/Scaffold: 1 Start: 12355865 End: 12358154 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 419 | 0 |
SDKGGAKLFVPAGRWLTGSFHLISHLTLWLDEDAVILGSTNSDDWPVVDPLPSYGRGRELIGERHQSLIYGHNLTDVIITGHNGTVDGQGSIWWNWYHNK TLNYTRPHLVELMNSTAVVISNLTFLNSPFWTIHPVYCSHVSVQNLTILAPLNSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDEYGISYGRPSR NILIRGITGKSQTSAGISIGSEMSGGVSEVHAENLQFFGSHTGIRIKTSPGRGGYVRNICVSNMTLDGVYIAIRFTSQYGEHPDEFYDPSALPIIEHITF KDVLGDNIKIAGLLEGLEGGSFQNICLSNIFLNVTSKSPWNCSSIH |
Full Sequence |
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Protein Sequence Length: 458 Download |
MVDVFVVLVA LFSGAPSPWA VVKGSHPHCK KLRENLGEIR PHSVTITEFG AVGDGVTLNT 60 KAFQNAIFYL NSFSDKGGAK LFVPAGRWLT GSFHLISHLT LWLDEDAVIL GSTNSDDWPV 120 VDPLPSYGRG RELIGERHQS LIYGHNLTDV IITGHNGTVD GQGSIWWNWY HNKTLNYTRP 180 HLVELMNSTA VVISNLTFLN SPFWTIHPVY CSHVSVQNLT ILAPLNSPNT DGIDPDSSDN 240 VCIEDCYIST GDDLISIKSG WDEYGISYGR PSRNILIRGI TGKSQTSAGI SIGSEMSGGV 300 SEVHAENLQF FGSHTGIRIK TSPGRGGYVR NICVSNMTLD GVYIAIRFTS QYGEHPDEFY 360 DPSALPIIEH ITFKDVLGDN IKIAGLLEGL EGGSFQNICL SNIFLNVTSK SPWNCSSIHG 420 YSYLVSPEIC EPLKESISPE KYSDCYHLSD PKRFSSE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-26 | 42 | 409 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-28 | 41 | 378 | 348 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-34 | 142 | 419 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 5.0e-35 | 42 | 342 | 311 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 1.0e-68 | 44 | 342 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 38 | 405 | 22 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 38 | 405 | 22 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 38 | 405 | 22 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 38 | 405 | 22 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-22 | 88 | 419 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |