Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna24528.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 51492.5 Isoelectric Point: 7.599 |
Chromosome | Chromosome/Scaffold: 1 Start: 11941423 End: 11943294 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 100 | 440 | 0 |
DTACQSESPAKILVPNHFTFMIQSTIFTGPCLSGLVLQVDGVIVPPDGPESWPKNNSRRQWLVFYRINKMSLQGSGVIDGRGDKWWQLPCKPHMGINGTT LPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCINVNVDSISISAPARSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCYDVDIRNITCG PGHGISIGSLGNHNSRACVKNITVRDSIIRVSDNGVRIKTWQGGSGAVSGVTFSNIHMDNVRNPIMIDQFYCLTKQCSNQTAAVYVSNILYSGIKGTYDV RNAPMHFGCSDSMPCTNLTLSDVELLPAVGDMMSDPYCWNA |
Full Sequence |
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Protein Sequence Length: 472 Download |
MKKLSKLSLV CVIFFGFLLL STQARWHNHT KHSKHNHPHK ISYISQPPSS SPGPAASYSP 60 PPEEPKNPYN STPGVFDVRL YGAVGDGQTD DTQAFKMAWD TACQSESPAK ILVPNHFTFM 120 IQSTIFTGPC LSGLVLQVDG VIVPPDGPES WPKNNSRRQW LVFYRINKMS LQGSGVIDGR 180 GDKWWQLPCK PHMGINGTTL PGPCDSPVAI RFFMSSNLTV QGLRIKNSPQ FHFRFDGCIN 240 VNVDSISISA PARSPNTDGI HIENTNDVKI YNSVISNGDD CVSIGSGCYD VDIRNITCGP 300 GHGISIGSLG NHNSRACVKN ITVRDSIIRV SDNGVRIKTW QGGSGAVSGV TFSNIHMDNV 360 RNPIMIDQFY CLTKQCSNQT AAVYVSNILY SGIKGTYDVR NAPMHFGCSD SMPCTNLTLS 420 DVELLPAVGD MMSDPYCWNA YGQLQTLTIP PVSCLLEGAP RTLLSDEIDR C* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-80 | 76 | 455 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-83 | 69 | 451 | 387 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-93 | 103 | 424 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-103 | 72 | 424 | 356 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-125 | 75 | 451 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-24 | 169 | 424 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-24 | 169 | 424 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-24 | 169 | 424 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-24 | 169 | 424 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-24 | 169 | 424 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |