Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna24890.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 320 Molecular Weight: 32929.7 Isoelectric Point: 4.732 |
Chromosome | Chromosome/Scaffold: 3 Start: 4155428 End: 4157223 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 159 | 241 | 7.4e-35 |
WCIASQSASETALQVALDYACGYGGADCSPVQPSGSCYNPNTLRDHASYAFNDYYQKNPAPTSCSFGGTAQLTTTDPSSGSCH |
Full Sequence |
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Protein Sequence Length: 320 Download |
MGVGSHRHSA LFFLFLFFSS GSGVPKNPPL EAIQQNKIQV NDENHILFSS AVSTAQHDTI 60 PVVNPSPTVT TPTLVFPASP PPPATVTTPT TPITTPTSPT ITPTTPYITP TTPYITPTTP 120 YITPTTPTIT PTTPTTTPTT PTTTPTTPTT TPASSGGTWC IASQSASETA LQVALDYACG 180 YGGADCSPVQ PSGSCYNPNT LRDHASYAFN DYYQKNPAPT SCSFGGTAQL TTTDPSSGSC 240 HYPSSATSTS MTPPSPTMST PIITTTPPSP TTPTIATPSG SSIYGEEPSE SPNAANSISS 300 CMLLLSTTLL GSLLAAIYL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-19 | 158 | 228 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-36 | 158 | 242 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 6e-19 | 147 | 247 | 2 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |