Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna24966.1-v1.0-hybrid |
Family | PL4 |
Protein Properties | Length: 1445 Molecular Weight: 164793 Isoelectric Point: 8.6226 |
Chromosome | Chromosome/Scaffold: 1 Start: 16145511 End: 16155739 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 55 | 661 | 0 |
TAKNRNRVVLDNGIVKLIFSNPEGNVIGIQYKGLDILEMGNEEDNRGYWDLVWKKNTTDKLQATKFKVITARPDQAEISFLRTYDVSLGNGTNIIPLTVD KRYILRRGASGFYAYGIFERLEGWPGVQDMDQIRMVFKLEQAKFDYMALSDTRQRMMPTAADRGNGEQLAYKEAVLLTDPSNPEFRGEVDDKYQYSIEDK DNKVHGWISTDESVGFWMITPSDEFRTGGPFKQDLTSHVGPTTLSMFVSTHYAGKDLGIKFEEGEAWKKVFGPVFVYLNSAPSSKNSTSILWNNAKQQLF KEVEIWPYNFTQSEDFPSSDQRGSVSGQLQIHDRYINESLLPASSGYVGLAAPGEVGSWQRENKGYQFWNQADEEGRFILKDVRPGNYSLYAWVPGVVGD YKYEADITIIPGCNIKLDNLTFEPPRTGPTLWEIGIPDRTAAEFYVPDPYPTLLNNLYNHIPSENFRQYGLWARYGERYPHSDLVYTVGVNNYTDHWFYA QVTKITGDETYVGTTWEVVFELHNVTNPGIYTLQLALASAHSAELQVRINSQSDERPLFSTKLIGGDNAIARHGIHGLYWLFSVEIPSSLLKEGNNSVYL SQTRGGE | |||
PL4 | 806 | 1421 | 0 |
NPRVSMLRSQSQIRLDNGLVQLTVSRPGGDVIGIKYKGSDNLLEHKNLRNNRGYWDVVWNKPGENLHYVDKLQATKFRVIMATADQVEISFVKIYNVSQQ HSAHVVPLDVDKRYIMRRGRSGFYAYAIFECREGWPEMKMEQIRMVYKLQHEKFQYMVLSDTRQTFMPKDRDRKNGEQLAYPEAVRLTKPSNRAFKGQVD DKYQYSMEDKDNKVHGWISIDNSLGFWMITPSDEFRSAGPMKQGLTSHVGPTTLSMFLSTHYAGKQAGIELKRGEAWKKVFGPVFVYLNSAPRSNNSTGT LWNDAKEQMAEEVKRWPYNFTQSEDFPPSDQRGSVSGRLIVHDRYMSESLLSASSAYMGLAAPGEVGSWQKESKGYQFWTRADKQGHFLIKDVRPGNYSL YGWVPGIVGDYKYEADIEIKPGSKIHLANLTYEPQRNGPTLWEIGIPDRSAAEFYVPDPYPTLMNKLYNNDHSDKFRQYGLWKRYEELYPDHDLIYTIGV NDYRHDWFYAHVTRSTGKERYVGTTWQIRFKLNSVMSQGNYTLQLALASATSSEIQVRFNDPSVKQPHFSTGLIGGDNAIARHGIHGLYWFFSVNVPSSL LQEGTNTIYLTQSRGG |
Full Sequence |
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Protein Sequence Length: 1445 Download |
MEKMRQWGWL LGSFAAMLLL VLFLARDGSY DETTNPVRRS LRSIIPWQQH GVSLTAKNRN 60 RVVLDNGIVK LIFSNPEGNV IGIQYKGLDI LEMGNEEDNR GYWDLVWKKN TTDKLQATKF 120 KVITARPDQA EISFLRTYDV SLGNGTNIIP LTVDKRYILR RGASGFYAYG IFERLEGWPG 180 VQDMDQIRMV FKLEQAKFDY MALSDTRQRM MPTAADRGNG EQLAYKEAVL LTDPSNPEFR 240 GEVDDKYQYS IEDKDNKVHG WISTDESVGF WMITPSDEFR TGGPFKQDLT SHVGPTTLSM 300 FVSTHYAGKD LGIKFEEGEA WKKVFGPVFV YLNSAPSSKN STSILWNNAK QQLFKEVEIW 360 PYNFTQSEDF PSSDQRGSVS GQLQIHDRYI NESLLPASSG YVGLAAPGEV GSWQRENKGY 420 QFWNQADEEG RFILKDVRPG NYSLYAWVPG VVGDYKYEAD ITIIPGCNIK LDNLTFEPPR 480 TGPTLWEIGI PDRTAAEFYV PDPYPTLLNN LYNHIPSENF RQYGLWARYG ERYPHSDLVY 540 TVGVNNYTDH WFYAQVTKIT GDETYVGTTW EVVFELHNVT NPGIYTLQLA LASAHSAELQ 600 VRINSQSDER PLFSTKLIGG DNAIARHGIH GLYWLFSVEI PSSLLKEGNN SVYLSQTRGG 660 ETFQGVMYDY IRLEAPSSHT DSQLCGAIHS NLSSSPPFLI SGSKGWLEMQ KAGRRSLKHW 720 GWLVGTLAAM LVLVVYLVGE KKYEQTTPKT STLLLRKILE RYPRTQRQDL NILKPSSGRN 780 FARPPYPGIN MVTNNSGRRI VARTENPRVS MLRSQSQIRL DNGLVQLTVS RPGGDVIGIK 840 YKGSDNLLEH KNLRNNRGYW DVVWNKPGEN LHYVDKLQAT KFRVIMATAD QVEISFVKIY 900 NVSQQHSAHV VPLDVDKRYI MRRGRSGFYA YAIFECREGW PEMKMEQIRM VYKLQHEKFQ 960 YMVLSDTRQT FMPKDRDRKN GEQLAYPEAV RLTKPSNRAF KGQVDDKYQY SMEDKDNKVH 1020 GWISIDNSLG FWMITPSDEF RSAGPMKQGL TSHVGPTTLS MFLSTHYAGK QAGIELKRGE 1080 AWKKVFGPVF VYLNSAPRSN NSTGTLWNDA KEQMAEEVKR WPYNFTQSED FPPSDQRGSV 1140 SGRLIVHDRY MSESLLSASS AYMGLAAPGE VGSWQKESKG YQFWTRADKQ GHFLIKDVRP 1200 GNYSLYGWVP GIVGDYKYEA DIEIKPGSKI HLANLTYEPQ RNGPTLWEIG IPDRSAAEFY 1260 VPDPYPTLMN KLYNNDHSDK FRQYGLWKRY EELYPDHDLI YTIGVNDYRH DWFYAHVTRS 1320 TGKERYVGTT WQIRFKLNSV MSQGNYTLQL ALASATSSEI QVRFNDPSVK QPHFSTGLIG 1380 GDNAIARHGI HGLYWFFSVN VPSSLLQEGT NTIYLTQSRG GAPFRGVMYD YIRLEGPSIR 1440 HPDT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10317 | RGL4_C | 1.0e-50 | 1247 | 1435 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 8.0e-66 | 816 | 1096 | 286 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 5.0e-66 | 814 | 1004 | 193 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 1.0e-69 | 52 | 341 | 300 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-72 | 60 | 243 | 191 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |