Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna26077.1-v1.0-hybrid |
Family | PL4 |
Protein Properties | Length: 678 Molecular Weight: 77302.9 Isoelectric Point: 5.6386 |
Chromosome | Chromosome/Scaffold: 5 Start: 7459724 End: 7461757 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 59 | 659 | 0 |
SQVVLDNGIVQLTFSNPGGEITGIKYHVIDNLLGNKAKQTAYWDVMWRGKLYGFQGTEFRVISATEDHVEISFINTYNPSFSNDQMIPLTVDKRYIIQRG RSGFYAYAIFQRDEGWPELAINDVRLVFKLQQDQFNYMAVSDTRKRFMPTADDRSLSQQLAYPEAKLLSNATSNPLFYGEVDDKYQYSTEDEDGKVHGWI STKSSVGFWLITPSTEFRAGGPLKQDLTSHVGPTTMCVFSSSHYASKQLGLVFQQGEAWKKVYGPVFVYLNHAGLNSDPTTTLWDNAKEQMLEEVRSWPY NFTQCPDFPASNQRGSVFGYLQVNDWYINRTSLVPASSAYVGLAAPGEVGSWQTESKGYQFWTRADENGYFVIKDVRPGNYNLYAWVPGIVGDYKYEDEI TIEPGSQITLQKLTYWPPRIGPTLWEIGIPDRSSAEFYIPDPYPALLNKLDNNNHSDESDKFRQYGIWGRYGELYPEHDLVYTVGVSDYRYDWFYAQVTR DTGKEMVGTTWQIQFELPKMAAPGDYMLRLALASAEYAELQIRVNYENMPALFSTGRIGEDNAIARHGIHGLYWLFNVNVPRSQLHEGNNTLYLTQTRGE N |
Full Sequence |
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Protein Sequence Length: 678 Download |
MRQGGGWLLC TTLLILLSLL CLSVEARHHS NIPRRALRTS NIPSTQDWYH AAKIAYPPSQ 60 VVLDNGIVQL TFSNPGGEIT GIKYHVIDNL LGNKAKQTAY WDVMWRGKLY GFQGTEFRVI 120 SATEDHVEIS FINTYNPSFS NDQMIPLTVD KRYIIQRGRS GFYAYAIFQR DEGWPELAIN 180 DVRLVFKLQQ DQFNYMAVSD TRKRFMPTAD DRSLSQQLAY PEAKLLSNAT SNPLFYGEVD 240 DKYQYSTEDE DGKVHGWIST KSSVGFWLIT PSTEFRAGGP LKQDLTSHVG PTTMCVFSSS 300 HYASKQLGLV FQQGEAWKKV YGPVFVYLNH AGLNSDPTTT LWDNAKEQML EEVRSWPYNF 360 TQCPDFPASN QRGSVFGYLQ VNDWYINRTS LVPASSAYVG LAAPGEVGSW QTESKGYQFW 420 TRADENGYFV IKDVRPGNYN LYAWVPGIVG DYKYEDEITI EPGSQITLQK LTYWPPRIGP 480 TLWEIGIPDR SSAEFYIPDP YPALLNKLDN NNHSDESDKF RQYGIWGRYG ELYPEHDLVY 540 TVGVSDYRYD WFYAQVTRDT GKEMVGTTWQ IQFELPKMAA PGDYMLRLAL ASAEYAELQI 600 RVNYENMPAL FSTGRIGEDN AIARHGIHGL YWLFNVNVPR SQLHEGNNTL YLTQTRGENT 660 FVGVMYDYIR LEGPPLR* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam13620 | CarboxypepD_reg | 0.004 | 411 | 468 | 60 | + Carboxypeptidase regulatory-like domain. |
cd10316 | RGL4_M | 1.0e-30 | 371 | 471 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10317 | RGL4_C | 8.0e-48 | 483 | 672 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10320 | RGL4_N | 1.0e-59 | 59 | 332 | 286 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 7.0e-66 | 59 | 239 | 190 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |