Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna26580.1-v1.0-hybrid |
Family | PL4 |
Protein Properties | Length: 641 Molecular Weight: 72840.2 Isoelectric Point: 5.3769 |
Chromosome | Chromosome/Scaffold: 1 Start: 3917947 End: 3925037 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 3 | 619 | 0 |
SQAVKLHIQDHHVILDNGILQVTLSKPGGIITGIQYNGIDNLLEIQNKESDRGYWDLVWSEAGSVGTTGTFDVYELHYNSTFIMLRNSSGFYSYAIYEHL KEWPPFNLPQTRITFKLRKDKFQYMAIADNRQRNMPLPDDRLPDRSEVLDFPEAVLLVNPIEPEFKGEVDDKYQYSSKNQNLQVHGWICMDPPVGFWQIT PSNEFRSGGPLKQNLSSHVGPTCLAMFLSAHYSGEDLVLKLKPDEPWKKVFGPIFIYLNSTPEAIDSLSLWEDAKKQMVTEVQTWPYKFPASTDFPPSHE RGNLSGRIQVQDRYLSDTYILAKGAYVGLAPPGDPGSWQRDCKLRGVSLGVPVVSCVSKCEALVDHLLRYSLIAQGYQFWTRADENGYYTINDIREGAYD LYAWVPGFIGDYRYDETINITAGCNIDIGDTVYKPPRSGPTLWEIGIPDRSAAEFYVPDPNPKYLNKLYVNHPDRFRQYGLWERYEDLYPEEDLVYTVGV SDYTKDWFFAHVTRKQVDGKYQGTTWKIKFQLDHVNQTKPYTLRIALATANVAELQIRVNDSKTDSPLFTTGVIGKDNTIARHGIHGLYWLYSIDIPGTL LLEGVNTVFLTQAMSSS |
Full Sequence |
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Protein Sequence Length: 641 Download |
MSSQAVKLHI QDHHVILDNG ILQVTLSKPG GIITGIQYNG IDNLLEIQNK ESDRGYWDLV 60 WSEAGSVGTT GTFDVYELHY NSTFIMLRNS SGFYSYAIYE HLKEWPPFNL PQTRITFKLR 120 KDKFQYMAIA DNRQRNMPLP DDRLPDRSEV LDFPEAVLLV NPIEPEFKGE VDDKYQYSSK 180 NQNLQVHGWI CMDPPVGFWQ ITPSNEFRSG GPLKQNLSSH VGPTCLAMFL SAHYSGEDLV 240 LKLKPDEPWK KVFGPIFIYL NSTPEAIDSL SLWEDAKKQM VTEVQTWPYK FPASTDFPPS 300 HERGNLSGRI QVQDRYLSDT YILAKGAYVG LAPPGDPGSW QRDCKLRGVS LGVPVVSCVS 360 KCEALVDHLL RYSLIAQGYQ FWTRADENGY YTINDIREGA YDLYAWVPGF IGDYRYDETI 420 NITAGCNIDI GDTVYKPPRS GPTLWEIGIP DRSAAEFYVP DPNPKYLNKL YVNHPDRFRQ 480 YGLWERYEDL YPEEDLVYTV GVSDYTKDWF FAHVTRKQVD GKYQGTTWKI KFQLDHVNQT 540 KPYTLRIALA TANVAELQIR VNDSKTDSPL FTTGVIGKDN TIARHGIHGL YWLYSIDIPG 600 TLLLEGVNTV FLTQAMSSSP VQGLMYDYIR LEGPSSSTST * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 4.0e-25 | 302 | 432 | 131 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-54 | 445 | 632 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-62 | 6 | 263 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-73 | 1 | 171 | 199 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Sequence Alignments (This image is cropped. Click for full image.) |
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