Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna26585.1-v1.0-hybrid |
Family | PL4 |
Protein Properties | Length: 212 Molecular Weight: 24065.1 Isoelectric Point: 6.8082 |
Chromosome | Chromosome/Scaffold: 1 Start: 3955481 End: 3956668 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 2 | 189 | 0 |
GELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNSKYINSLFVNHPDRFRQYGLWDRYTELYPDADLVYTVGVSDYSKDWFFAQVTRKKGDNKYQGTTWQI KFKLDDVDQNGTYKLRVAIASATLSELQVRVNNPKANPPLFTSGLIGKDNSIARHGIHGLYWLYKVDIPNSQLVQGDNTIFLTQPRST |
Full Sequence |
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Protein Sequence Length: 212 Download |
MGELVYEPPR DGPTLWEIGI PDRSAAEFYV PDPNSKYINS LFVNHPDRFR QYGLWDRYTE 60 LYPDADLVYT VGVSDYSKDW FFAQVTRKKG DNKYQGTTWQ IKFKLDDVDQ NGTYKLRVAI 120 ASATLSELQV RVNNPKANPP LFTSGLIGKD NSIARHGIHG LYWLYKVDIP NSQLVQGDNT 180 IFLTQPRSTG PFQGIMYDYI RLEGPPSASS K* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10317 | RGL4_C | 2.0e-62 | 16 | 203 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Sequence Alignments (This image is cropped. Click for full image.) |
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