Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna26587.1-v1.0-hybrid |
Family | PL4 |
Protein Properties | Length: 950 Molecular Weight: 107714 Isoelectric Point: 4.9255 |
Chromosome | Chromosome/Scaffold: 1 Start: 3959643 End: 3968114 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 381 | 517 | 1.3004e-42 |
ITSNPGCFTEMGDLVHEPPRDGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWSRYTELYPDADLVYTVGVSDYSKDWFFAQVPRQKD NTHEGTTWQIKFKLNIVHRNGTYKLRVAIASATLAEM | |||
PL4 | 5 | 384 | 0 |
GVRLHNQGRHVVMDNGIVQVTLSNPDGIITGIRYNGIDNLLEPLNAEHNRGYWDLVWSGPGVKGTFDVIKGTDFRVIVENEELVELSFMRTWDPSLEGKC VPLNIDKRFVMLRGSSGIYSYAIYEHLKDWPDFEIGETRITFKLSKDKFQYMAIADNRQRCMPLPDDRMSGRCQPLAFAEAVLLLDPKNKELAGEVDDKY QYSCMNKDIQVHGWVCNDPPVGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSSHYAGQDLNPKFRGGEPWKKVFGPVFIYLNSAPIRDDPFFLWED AKRQMMAEVQSWPYSFPASEDFQKSNQRGNVSGRLLVLDRYVSEDITPANDAYVGLAPPGDVGSWQRECKYSESVLITSN | |||
PL4 | 575 | 949 | 0 |
IQDRHVMMDNGFVQVTLSKPEGIVTGIRYNGLDNLLEIRNEETNRGYWDLVWSEASTGTTGIFDVIKGTEFDVIVENDDQVELSFKRTWDPSQEGKLVPL NIDKRFVMVRGSSGFYSYAIYEHLQEWPAFQLGETRIAFKLRKDKFHYMAMADNRQRYMPLPDDRLPLRGQPLAYPEAVLLTNPIEPELKGEVDDKYQYS CDNKDNRVHGWICTDPPVGLWQITPSNEFRSGGPVKQNLTSHVGPTTLAMFLSAHYTGEDLVPKFTTGEYWKKVFGPVFMYVNSEYAGNDPLVSLWEDAK LQMMIEVQSWPYSFPASEDFPKSGQRGNISGRLLIQDRYISDDYVSANGAYVGLAPPGEVGSWQRECKVTEVWTE |
Full Sequence |
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Protein Sequence Length: 950 Download |
MSGEGVRLHN QGRHVVMDNG IVQVTLSNPD GIITGIRYNG IDNLLEPLNA EHNRGYWDLV 60 WSGPGVKGTF DVIKGTDFRV IVENEELVEL SFMRTWDPSL EGKCVPLNID KRFVMLRGSS 120 GIYSYAIYEH LKDWPDFEIG ETRITFKLSK DKFQYMAIAD NRQRCMPLPD DRMSGRCQPL 180 AFAEAVLLLD PKNKELAGEV DDKYQYSCMN KDIQVHGWVC NDPPVGFWQI TPSDEFRSGG 240 PLKQSLTSHV GPTTLAIFLS SHYAGQDLNP KFRGGEPWKK VFGPVFIYLN SAPIRDDPFF 300 LWEDAKRQMM AEVQSWPYSF PASEDFQKSN QRGNVSGRLL VLDRYVSEDI TPANDAYVGL 360 APPGDVGSWQ RECKYSESVL ITSNPGCFTE MGDLVHEPPR DGPTLWEIGI PDRSAAEFYV 420 PDPDPKYINK LYVNHPDRFR QYGLWSRYTE LYPDADLVYT VGVSDYSKDW FFAQVPRQKD 480 NTHEGTTWQI KFKLNIVHRN GTYKLRVAIA SATLAEMQGE ITQLQDMGFM GSTGCSTSMY 540 RVFSLLREST AAVDAAVVAA RRGVIMPPIG VQLLIQDRHV MMDNGFVQVT LSKPEGIVTG 600 IRYNGLDNLL EIRNEETNRG YWDLVWSEAS TGTTGIFDVI KGTEFDVIVE NDDQVELSFK 660 RTWDPSQEGK LVPLNIDKRF VMVRGSSGFY SYAIYEHLQE WPAFQLGETR IAFKLRKDKF 720 HYMAMADNRQ RYMPLPDDRL PLRGQPLAYP EAVLLTNPIE PELKGEVDDK YQYSCDNKDN 780 RVHGWICTDP PVGLWQITPS NEFRSGGPVK QNLTSHVGPT TLAMFLSAHY TGEDLVPKFT 840 TGEYWKKVFG PVFMYVNSEY AGNDPLVSLW EDAKLQMMIE VQSWPYSFPA SEDFPKSGQR 900 GNISGRLLIQ DRYISDDYVS ANGAYVGLAP PGEVGSWQRE CKVTEVWTE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10317 | RGL4_C | 1.0e-25 | 406 | 513 | 108 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 4.0e-74 | 576 | 858 | 287 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 6.0e-75 | 6 | 292 | 293 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-96 | 1 | 200 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-101 | 566 | 767 | 202 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Sequence Alignments (This image is cropped. Click for full image.) |
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