Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna26823.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 520 Molecular Weight: 57521.5 Isoelectric Point: 10.2688 |
Chromosome | Chromosome/Scaffold: 7 Start: 6138685 End: 6141650 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 179 | 504 | 0 |
NSRARTVELVVPKNRNYHLKPITFSGPCKSHVTFKIYGTIKASPIRSDYKRDRRHWITFENLQNFRVEGGGTGIINGNGRKWWENSCKVNKSLAVTFYEC KNLEVANLRFRNAQKMHLSFQKCVLVKVFNLIITAPANSPNTDGIHVTDTKYISINSCQIRTGDDCISIVSGSRNVQASDITCGPGHGISIGSLGSGNSE AQVSDVVVTRAKLIGTTNGLRIKTWQGGSGYAKNIRFQNVLLHNVTNPIIIDQHYCDQKKPCKDQASAVRISGVVYRNVRGTSASEVAVKFDCSERFGCR KILVQDVNIVPLNDEGIATASCQNVG |
Full Sequence |
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Protein Sequence Length: 520 Download |
MARLHPRRLQ QRPRPFSLPD ESGEKVVGDA TGVFWGGGAP SPTPEGGERT DVHTLRPLLE 60 AFRSQPHHLC FSIEQVKVKM QSSSQRHFLS LLFLLLIIAP SYFSFPLGHN NPEERPVLDH 120 HHHQTYTGHN ISRKTSRREL ITARASAKVV YNVHDFGAKA NGGDDTKAFR KAWKKACSNS 180 RARTVELVVP KNRNYHLKPI TFSGPCKSHV TFKIYGTIKA SPIRSDYKRD RRHWITFENL 240 QNFRVEGGGT GIINGNGRKW WENSCKVNKS LAVTFYECKN LEVANLRFRN AQKMHLSFQK 300 CVLVKVFNLI ITAPANSPNT DGIHVTDTKY ISINSCQIRT GDDCISIVSG SRNVQASDIT 360 CGPGHGISIG SLGSGNSEAQ VSDVVVTRAK LIGTTNGLRI KTWQGGSGYA KNIRFQNVLL 420 HNVTNPIIID QHYCDQKKPC KDQASAVRIS GVVYRNVRGT SASEVAVKFD CSERFGCRKI 480 LVQDVNIVPL NDEGIATASC QNVGVSHRGI VSPKCSSTN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-70 | 152 | 515 | 371 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 8.0e-75 | 146 | 514 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-95 | 177 | 507 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-116 | 137 | 519 | 392 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-124 | 117 | 516 | 411 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-20 | 249 | 433 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 3e-20 | 227 | 464 | 55 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-20 | 227 | 464 | 55 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-20 | 227 | 464 | 55 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-20 | 227 | 464 | 55 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |