Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna27330.1-v1.0-hybrid |
Family | CBM57 |
Protein Properties | Length: 760 Molecular Weight: 83740 Isoelectric Point: 6.3064 |
Chromosome | Chromosome/Scaffold: 3 Start: 24403145 End: 24414240 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 397 | 566 | 6.1e-28 |
HINCGGNAITVTESTTHIPYEYEADQDPGGPSRFYNSKTNWGFSSTGYFPDDGIQNDAFIVDNETALSMPDPQLYMTARVSPISLTYFGFCLMNGNYSVK LHFVEIMFTNDRTYHSLGRRIFDIYIQGIRVEKDFNIADVAGGTGKLINQSYTASVTNHTLEIRFFWNGK |
Full Sequence |
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Protein Sequence Length: 760 Download |
MLRLLRSNPK SRNLGFETTA AAIFLLPRPS DRFLTVNAHR SHGFSGIDGS TSHKKSLLAF 60 SKAAEVMMNP LEQCTCEKCT PPVCEYACKN RPLPCSSWVL LFIGLPLKEE KRRSLKSQSL 120 AGTLPPELAR LPYLKVISLG GNRLTGSIPI ELGNISTLQS IDINANNFSG SLPQELGNLT 180 SIEKLLLDSN NFIGKLPETF ARLTTLKDFR VGDSHFSGKI PDFIQNWKLL ERLQIQASGL 240 TGPIPGNISL LKGLIDLRIT NLDGPEAPIP SLNNSKNLDT LWLRNCNLIG QLPTYLSELT 300 ELETLDLSFN KLTGEIPSPF VKDDLDYIFL TGNLLNGSVP QNLKGSHIDL SYNNITPGTN 360 DICENGGKNL FASSSKGNNS IVSCLNTSCP EEFYSFHINC GGNAITVTES TTHIPYEYEA 420 DQDPGGPSRF YNSKTNWGFS STGYFPDDGI QNDAFIVDNE TALSMPDPQL YMTARVSPIS 480 LTYFGFCLMN GNYSVKLHFV EIMFTNDRTY HSLGRRIFDI YIQGIRVEKD FNIADVAGGT 540 GKLINQSYTA SVTNHTLEIR FFWNGKGTQS IPARGVYGPL ISAISVYPAD LKGVDLQTGK 600 FTLRQIKTAT NNFDKANQIG EGGFGPVYKA LLLKERASLL DLVDPRLGSF NKDQMITTIN 660 VALLCANVSS AVRPSMSSVV SMLEGRASVQ EVVFDPNASI KEINAMRKHF QSNIFEENNG 720 DSESQRETMS IEKSWTASST SAQDLYPVLP DSYYWENRN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00113 | PLN00113 | 3.0e-20 | 115 | 343 | 261 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 5.0e-22 | 114 | 371 | 268 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 9.0e-25 | 115 | 346 | 236 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 1.0e-25 | 114 | 361 | 256 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
pfam11721 | Malectin | 1.0e-57 | 394 | 584 | 194 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Gene Ontology | |
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GO Term | Description |
GO:0005515 | protein binding |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3rgz_A | 1e-18 | 109 | 343 | 248 | 462 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 3rgz_A | 0.00000000000002 | 115 | 355 | 401 | 692 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 3rgz_A | 0.000000000004 | 115 | 322 | 375 | 560 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 3rgz_A | 0.00000000008 | 114 | 317 | 496 | 721 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 3rgz_A | 0.0000000002 | 120 | 198 | 644 | 722 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
Sequence Alignments (This image is cropped. Click for full image.) |
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