Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna27787.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 519 Molecular Weight: 55271.5 Isoelectric Point: 4.8319 |
Chromosome | Chromosome/Scaffold: 2 Start: 15585502 End: 15587058 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 383 | 0 |
TDACESGSTSTVLVPTGTYKLLEQISFEGPCNAPIQFQLQGMLQAPEDRSQLDDSWVYFKTIDKLTLSGGGTFDGQGELSWKEDKHFHSTPVDVRFKTVN NSVISDITFMDSAKFHISVHASSNITFQRVTITAPEDSPNTDGIHIAGSSKITVSDSYIATGDDCVSIGDGATEILVSNITCGPGHGISIGSLGKYPDEQ PVVGVTVKNCTLTGTTNGARIKTWPDSPAEGVAKDILYQDIIMVNVKNPILINQNYCDKGKMCKQMVPSKVQISDVRFKNIRGSSLSPVAVKLDCSQSMP CQNVELSDIDLAYSGDEKDEITSECSNVKPR |
Full Sequence |
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Protein Sequence Length: 519 Download |
MKSMNILALL LLSLLLASTV AADDQSNIFD VTSSKYGGNP DSDITKALTM AWTDACESGS 60 TSTVLVPTGT YKLLEQISFE GPCNAPIQFQ LQGMLQAPED RSQLDDSWVY FKTIDKLTLS 120 GGGTFDGQGE LSWKEDKHFH STPVDVRFKT VNNSVISDIT FMDSAKFHIS VHASSNITFQ 180 RVTITAPEDS PNTDGIHIAG SSKITVSDSY IATGDDCVSI GDGATEILVS NITCGPGHGI 240 SIGSLGKYPD EQPVVGVTVK NCTLTGTTNG ARIKTWPDSP AEGVAKDILY QDIIMVNVKN 300 PILINQNYCD KGKMCKQMVP SKVQISDVRF KNIRGSSLSP VAVKLDCSQS MPCQNVELSD 360 IDLAYSGDEK DEITSECSNV KPRITGVTKS LACANLRDIP IEGSPSPSTS PPLEPAPVQQ 420 SPPPAPVAKH HHPPPLSPPA EETPPLPPAE ETPPLPPVEE TPPLPPAVET PPLPPAVGTP 480 PKVTSHDPSP PPPSPYPYRR LGPTSSAAGN NNLWKKRL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-80 | 31 | 363 | 345 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-80 | 38 | 368 | 342 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-88 | 26 | 395 | 377 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-106 | 56 | 381 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-117 | 19 | 386 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-22 | 119 | 359 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 1e-18 | 117 | 380 | 74 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 1e-18 | 117 | 380 | 74 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 1e-18 | 117 | 380 | 74 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1hg8_A | 4e-16 | 116 | 336 | 70 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |